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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:30:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_S15.html
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#====================================
# Aligned_structures: 2
#   1: 1ju3a.pdb
#   2: 1lnsa.pdb
#
# Length:        706
# Identity:       77/706 ( 10.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/706 ( 10.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          243/706 ( 34.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ju3a.pdb               1  -NYSVASNVMVPMRD-------GVRLAVDLYRPDADGPVPVLLVRNPYD--KFDVFAWST   50
1lnsa.pdb               1  LLER--EVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGIN-DKANDL   57
                                     V                    RP      PV     PY        A   

1ju3a.pdb              51  QST-------------------------------------------------NWLEFVRD   61
1lnsa.pdb              58  AL-HDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTR  116
                                                                                   F   

1ju3a.pdb              62  GYAVVIQDTRGLFASEGEFVPHV--DDEADAEDTLSWILE---------------QAWCD  104
1lnsa.pdb             117  GFASIYVAGVGTRSSDGFQTSGDYQQ-IYSMTAVIDWLNGRARAYTSRKKTHEIKASWAN  175
                           G A       G   S G                   W                    W  

1ju3a.pdb             105  GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVE------A  158
1lnsa.pdb             176  GKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYR-E-NGLVRSPGGFPGED  233
                           G V M G SYLG     AA  GV GL  I         Y        G            

1ju3a.pdb             159  LLGWSALIGTGLITSRSDA-RPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWV  217
1lnsa.pdb             234  LDVLAALTY-SRNLDGA-DFLKGNAEYEKRLAEMTAAL----------------------  269
                           L    AL                 A     LA                            

1ju3a.pdb             218  IDQV-VDHPDNDESWQSISLFERLGGLATPALITAGWYD-GF-VGESLRTFVAVKDNADA  274
1lnsa.pdb             270  ----DRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAK  325
                                    D    W                LI  G  D             A       

1ju3a.pdb             275  RLVVGPWSHSNLT--GRNADRKFGIAATYPIQ--EATTMHKAFFDRHLRGETDAL--AGV  328
1lnsa.pdb             326  HAFLHRGAHI---YMNSWQ-------------SIDFSETINAYFVAKLLDRD---LNLNL  366
                                   H                                A F   L            

1ju3a.pdb             329  PKVRLFVMGID-EWRDETDWPLPDTAYTPFYLGGSGAANTSTGGGTLSTSISGTESADTY  387
1lnsa.pdb             367  PPVILQENSKDQVWTMMNDFGA--NTQIKLPLGK-----------------T-AVSFAQF  406
                           P V L     D  W    D            LG                      S    

1ju3a.pdb             388  LYD--PADPVPSLGGTL--LFHNGDNGPADQRPIHD-RDDVLCYSTE-VLTDPVEVTGTV  441
1lnsa.pdb             407  DNNYDDETF--------KKYSKDFN---VFKKDLFENKANEAVIDLELP--SMLTINGPV  453
                                                                         E          G V

1ju3a.pdb             442  SARLFVSSSAVDTDFTAKLVDVFPDG----------------------------------  467
1lnsa.pdb             454  ELELRLKLNDTKGFLSAQILDFGQ--KKRLEDKVRVKDFKVLDRGRNFMLDDLVELPLVE  511
                              L            A   D                                       

1ju3a.pdb             468  -RAIALCDGIVRMRYRETLVNPTLIEAGEIYEVAIDMLATSNVFLPGHRIMVQVSSSNFP  526
1lnsa.pdb             512  SPYQLVTKGFTNLQNQ-SLLTVSDLKADEWFTIKFELQPTIYHLEKADKLRVILYSTDFE  570
                                   G         L       A E          T           V   S  F 

1ju3a.pdb             527  KYDRNSNTGGVIAREQLEEMCTAVNRIHRGPEHPSHIVLPIIKR--  570
1lnsa.pdb             571  HTV-RD-------------NRKVTYEIDLS---QSKLIIPIESVKN  599
                                                     I       S    PI     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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