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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:33:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_S15_N.html
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#====================================
# Aligned_structures: 2
#   1: 1ju3a.pdb
#   2: 1lnsa.pdb
#
# Length:        439
# Identity:       56/439 ( 12.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     56/439 ( 12.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          145/439 ( 33.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ju3a.pdb               1  -NYSVASNVMVPMRD-------GVRLAVDLYRPDADGPVPVLLVRNPYD--KFDVFAWST   50
1lnsa.pdb               1  LLER--EVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGIN-DKANDL   57
                                     V                    RP      PV     PY        A   

1ju3a.pdb              51  QST-------------------------------------------------NWLEFVRD   61
1lnsa.pdb              58  AL-HDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTR  116
                                                                                   F   

1ju3a.pdb              62  GYAVVIQDTRGLFASEGEFVPHV--DDEADAEDTLSWILE---------------QAWCD  104
1lnsa.pdb             117  GFASIYVAGVGTRSSDGFQTSGDYQQ-IYSMTAVIDWLNGRARAYTSRKKTHEIKASWAN  175
                           G A       G   S G                   W                    W  

1ju3a.pdb             105  GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVE------A  158
1lnsa.pdb             176  GKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYR-ENGLVR-SPGGFPGED  233
                           G V M G SYLG     AA  GV GL  I         Y       G             

1ju3a.pdb             159  LLGWSALIGTGLITSRSDA-RPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWV  217
1lnsa.pdb             234  LDVLAALTY-SRNLDGA-DFLKGNAEYEKRLAEMTAAL----------------------  269
                           L    AL                 A     LA                            

1ju3a.pdb             218  IDQV-VDHPDNDESWQSISLFERLGGLATPALITAGWYD-GF-VGESLRTFVAVKDNADA  274
1lnsa.pdb             270  ----DRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAK  325
                                    D    W                LI  G  D             A       

1ju3a.pdb             275  RLVVGPWSHSNLT--GRNADRKFGIAAT-YPIQEATTMHKAFFDRHLRGETDAL--AGVP  329
1lnsa.pdb             326  HAFLHRGAHI---YMNSWQ---------SI---DFSETINAYFVAKLLDRD---LNLNLP  367
                                   H                               A F   L            P

1ju3a.pdb             330  KVRLFVMGID-EWRDETDW  347
1lnsa.pdb             368  PVILQENSKDQVWTMMNDF  386
                            V L     D  W    D 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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