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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:33:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_S9.html
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#====================================
# Aligned_structures: 2
#   1: 1h2wa.pdb
#   2: 1n1ma.pdb
#
# Length:        291
# Identity:       43/291 ( 14.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/291 ( 14.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/291 ( 15.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1h2wa.pdb               1  DASD-YQTVQIFYPSKDGTKIPMFIVHKKGIKLDG-SHPAFLYGYGGFNISI-TPNYS-V   56
1n1ma.pdb               1  --QMPSKKLDFII--LNETKFWYQMILPPHFDKS-KKYPLLLDVYAGPCSQKADTVFRLN   55
                                             TK                  P  L  Y G             

1h2wa.pdb              57  SRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILAN-KQNCFDDFQCAAEYLIKEGYTSP  115
1n1ma.pdb              56  WATYLASTENIIVASFDGRGSGYQGDKIMHAINR-RLGTFEVEDQIEAARQFSKMGFVDN  114
                                        A    RG G  G                  D   AA    K G    

1h2wa.pdb             116  KRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSK  175
1n1ma.pdb             115  KRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD----SVYTERYMGL-PTP  169
                           KR  I G S GG             F C IA   V                   G     

1h2wa.pdb             176  -QHFEWLIKYSPLHNV-KLPEADDI-QYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGR  232
1n1ma.pdb             170  EDNLDHYRNSTVMSRAEN-------FKQVEYLLIHGTADDNVHFQQSAQISKALVDVG--  220
                                                          LL     DD V    S      L      

1h2wa.pdb             233  SRKQNNP--LLIHVDTKAGHGAG-KPTAKVIEEVSDMFAFIARCLNIDWIP  280
1n1ma.pdb             221  -------VDFQAMWYTDEDHG--IASSTAHQHIYTHMSHFIKQCFS-----  257
                                          T   HG               M  FI  C       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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