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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:34:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peripla_BP_2.html
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#====================================
# Aligned_structures: 2
#   1: 1efdn.pdb
#   2: 1n2za.pdb
#
# Length:        278
# Identity:       41/278 ( 14.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     41/278 ( 14.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           49/278 ( 17.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1efdn.pdb               1  GIDP--NRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNL   58
1n2za.pdb               1  ----AAPRVITLSPANTELAFAAGITPVGVSS------YSDYPPQAQKIEQVSTWQGMNL   50
                                  R   L     EL  A GI P GV            PP       V      NL

1efdn.pdb              59  ELLTEMKPSFMVWSAGYGPSPEMLAR----IAPGRGFNFSDGKQPLAMARKSLTEMADLL  114
1n2za.pdb              51  ERIVALKPDLVIAWRGGNAE-RQVDQLASLGIKVMWVDAT----SIEQIANALRQLAPWS  105
                           E     KP       G                                    L   A   

1efdn.pdb             115  NLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYG  174
1n2za.pdb             106  PQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFG-I-NPPFTSGKESIQNQVLEVCG  163
                                AE       D     K            L            G  S     L   G

1efdn.pdb             175  IPNAWQGETNFWGSTAVSIDRLAAYKD-VDVLCFDH--DNSKDMDALMATPLWQAMPFVR  231
1n2za.pdb             164  GENIFKDSRV--PWPQVSREQVLARS-PQAIVITG-GPDQIPKIKQYWG-----------  208
                             N             VS     A              D                     

1efdn.pdb             232  A---G-RFQRVPAVWFYGATLSAMHFVRVLDNAIG---  262
1n2za.pdb             209  -EQLKIPVIPLTSDWFERASPRIILAAQQLCNALSQVD  245
                                         WF  A          L NA     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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