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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:20:39 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Pertussis_S2S3_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1bcpb.pdb
#   2: 1bcpc.pdb
#
# Length:        197
# Identity:      139/197 ( 70.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    139/197 ( 70.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            1/197 (  0.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bcpb.pdb               1  PGIVIPPQEQITQHGSPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTY   60
1bcpc.pdb               1  -GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTY   59
                            GIVIPP    TQ G  YGRC N TRALTVAELRG   LQ YLR  T GWSI  LYDGTY

1bcpb.pdb              61  LGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAV  120
1bcpc.pdb              60  LGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAV  119
                           LG  YGG IKD  PG  F    TFCI T   TGQPA DHYYS VTATRLL STNSRLCAV

1bcpb.pdb             121  FVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFE  180
1bcpc.pdb             120  FVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQ  179
                           FVR GQ VIGAC SPY G Y  MY  LR  LY IY  G  VRVHVSKEEQYYDYEDATF 

1bcpb.pdb             181  TYALTGISICNPGSSLC  197
1bcpc.pdb             180  TYALTGISLCNPAASIC  196
                           TYALTGIS CNP  S C


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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