################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:55:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Phage_integrase.html
################################################################################################
#====================================
# Aligned_structures: 4
#   1: 1a0p.pdb
#   2: 1ae9a.pdb
#   3: 1aiha.pdb
#   4: 4crxa.pdb
#
# Length:        255
# Identity:        4/255 (  1.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/255 (  7.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          136/255 ( 53.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a0p.pdb                1  K------DLSEAQVERLLQAP-LI-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISL   52
1ae9a.pdb               1  -----RSRLTADEYLKIYQAA-ESS----PCWLRLAMELAVVTGQRVGDLCEMKWSDIVD   50
1aiha.pdb               1  -E-TELAFLYERDIYRLLAECDNS-R---NPDLGLIVRICLATGARWSEAETLTQSQVM-   53
4crxa.pdb               1  --AKQALAFERTDFDQVRSLMENS-DRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISR   57
                                   l              s                  Tg r  e      sdi  

1a0p.pdb               53  RQ----GVVRVIG---KG--NKERLVPLG--------EEAVYWLETYLEHGR-PWLLNGV   94
1ae9a.pdb              51  ------GYLYVEQ-SKTG---VKIAIPTALHIDALGI-SMKETLDKCKEILG--------   91
1aiha.pdb              54  P-----YKITFTN--TKS--KKNRTVPIS--------DELFDML----------------   80
4crxa.pdb              58  T-DGGRMLIHIGRTKTL-VSTAGVEKALS--------LGVTKLVERWISVSGVADD----  103
                                                     p                l                

1a0p.pdb               95  SI-DVLFPS-QRA----------QQMTRQ-TFWHRIKHYAVLAG-----ID--SEKLSPH  134
1ae9a.pdb              92  -G-ETIIAS-TRR----------EPLSSG-TVSRYFMRARKASG-----LSFEGDPPTFH  132
1aiha.pdb              81  ---------PKKR----------GRLF--NDAYESFENAVLRAE-----IELPKGQ-LTH  113
4crxa.pdb             104  -PNNYLFCR-VR-KNGVAAPSATSQLSTR-ALEGIFEATHRLIYGAKDDSGQRYLAWSGH  159
                                      r             l         f                       H

1a0p.pdb              135  VLRHAFATHLLNHGAD--LRVVQMLLSDL--------S-------TTQIYTHV-----AT  172
1ae9a.pdb             133  ELRSLSARLYEKQI--S-DKFAQHLL---GHFRDDRGREWDKIEI---------------  171
1aiha.pdb             114  VLRHTFASHFMMNG--GNILVLKEIL---GH---STIE-------MTMRYAHFAPS--HL  156
4crxa.pdb             160  SARVGAARDMARAG--VSIPEIMQAG---GW---TNVN-------IVMNYIRNLDSETGA  204
                            lR   A      g           l                                  

1a0p.pdb              173  ERLRQLHQ-------  180
1ae9a.pdb                  ---------------     
1aiha.pdb             157  ESAVKFN-PLSNPAQ  170
4crxa.pdb             205  MVRLLED--------  211
                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################