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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:27:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Phage_lysozyme.html
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#====================================
# Aligned_structures: 2
#   1: 1k28a.pdb
#   2: 1l58.pdb
#
# Length:        173
# Identity:       72/173 ( 41.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     72/173 ( 41.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/173 (  5.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1k28a.pdb               1  DNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQINKVLSKQVGREI   60
1l58.pdb                1  ----MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLN--AAKSELDKAIGRNC   54
                               M   EMLR DEGLRLK Y DTEGY TIGIGHL  K P          L K  GR  

1k28a.pdb              61  TGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGV  120
1l58.pdb               55  N---GVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGV  111
                               G IT  EA  LF  D     R I    K  PV       R  AL NM FQMG  GV

1k28a.pdb             121  AKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVE  173
1l58.pdb              112  AGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTANRAKRVITTFRTGTWDAYKNL  164
                           A F   L       W  A      S WY QT  RA RV     TG    Y   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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