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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:33:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PotD.html
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#====================================
# Aligned_structures: 2
#   1: 1a99a.pdb
#   2: 1pot.pdb
#
# Length:        346
# Identity:      111/346 ( 32.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    111/346 ( 32.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/346 (  8.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a99a.pdb               1  QKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTG--FDLVVPSA   58
1pot.pdb                1  NNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKD-GAYDLVVPST   59
                             TL  YNW  Y  P     F KETGIKV Y    SNE    KL         DLVVPS 

1a99a.pdb              59  SFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDK  118
1pot.pdb               60  YYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLN--KPFDPNNDYSIPYIWGATAIGVNGDA  117
                                    G  Q  DKSKL    NLDP  L      DP N    PY W  T IG N D 

1a99a.pdb             119  VKAVLGENAP---VDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKA  175
1pot.pdb              118  VD--------PKSVTSWADLW----KPEYKG-SLLLTDDAREVFQMALRKLGYSGNTTDP  164
                           V            V SW            K       D   EVF   L  LG   N T  

1a99a.pdb             176  DDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVN  235
1pot.pdb              165  KEIE-AAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAG------TP  217
                                 A   L KL PN   F S    N    G       W G    A            

1a99a.pdb             236  VSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATP  295
1pot.pdb              218  IDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARK  277
                                PKEG     D  A PA AKNK  A    N LLRPDV         Y   N AA  

1a99a.pdb             296  LVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSG  341
1pot.pdb              278  LLSPEVANDKTLYPDAETIKNGEWQNDVGA-ASSIYEEYYQKLKAG  322
                           L S EV      YP A                         K K G


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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