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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:07:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RNA_pol_A_CTD.html
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#====================================
# Aligned_structures: 2
#   1: 1coo.pdb
#   2: 1doqa.pdb
#
# Length:         88
# Identity:       21/ 88 ( 23.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     21/ 88 ( 23.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/ 88 ( 29.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1coo.pdb                1  FDPI-----LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI   55
1doqa.pdb               1  ----EQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEI   56
                                    L  P   L L  R    LK E I     L       L   P  G  SL EI

1coo.pdb               56  KDVLASRGLSLGMRLENWPPASIADE--   81
1doqa.pdb              57  KEALEKKGFTL---------------KE   69
                           K  L   G  L                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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