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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:58:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Recep_L_domain.html
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#====================================
# Aligned_structures: 2
#   1: 1igra1.pdb
#   2: 1igra2.pdb
#
# Length:        180
# Identity:       26/180 ( 14.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/180 ( 14.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/180 ( 21.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1igra1.pdb              1  EI-----CGPGIDIRNDYQQLKRLENCTVIEGYLHILL--ISKAEDYRSY--RFPKLTVI   51
1igra2.pdb              1  --KVCEEEKKTKTI-DSVTSAQMLQGCTIFKGNLLINIRRGNNIASEL--ENFMGLIEVV   55
                                        I         L  CT   G L I                      V 

1igra1.pdb             52  TEYLLLFRVAGLESLGDLFPNLTVIRGWKLFY-NYALVIFEMTNLKDIG-LYNL-RNITR  108
1igra2.pdb             56  TGYVKIRHSHALVSLS-FLKNLRLILGEEQLEGNYSFYVLDNQNLQQLWDWDHRNLTIKA  114
                           T Y        L SL     NL  I G      NY        NL            I  

1igra1.pdb            109  GAIRIEKNADLCY-LSTVDWSLILDAVSNNYI---------VGNKPP--------KECG-  149
1igra2.pdb            115  GKMYFAFNPKLCVSEIY-RMEEVTGTKGRQSKGDINTRNNGERASCEKEQKLISEEDL-N  172
                           G      N  LC                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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