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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:59:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RhoGAP.html
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#====================================
# Aligned_structures: 2
#   1: 1pbwa.pdb
#   2: 1tx4a.pdb
#
# Length:        209
# Identity:       29/209 ( 13.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     29/209 ( 13.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/209 ( 18.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1pbwa.pdb               1  -------LPDLAEQFA---PPDIAPPLLIKLVEAIEKKGLECSTLYRTQSS--SNLAELR   48
1tx4a.pdb               1  PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQV-VREVQ   59
                                     L             P  L   V       L      R          E  

1pbwa.pdb              49  QLLDCDTPS-VDLEM-IDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYI  106
1tx4a.pdb              60  QKYN--MGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFL-N-IDESQRV  115
                           Q         VD       H  A   K  L  LP P      Y                 

1pbwa.pdb             107  QLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASS  166
1tx4a.pdb             116  PATLQVLQT--LPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLW------  167
                                       P      L  L       S  S  N      L   F P L        

1pbwa.pdb             167  --------DNTENLIKVIEILISTEW---  184
1tx4a.pdb             168  AKDAAITLKAINPINTFTKFLLDHQGELF  196
                                               L        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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