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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:59:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Rho_GDI.html
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#====================================
# Aligned_structures: 2
#   1: 1ds6b.pdb
#   2: 1rhoa.pdb
#
# Length:        179
# Identity:      103/179 ( 57.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    103/179 ( 57.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/179 ( 20.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ds6b.pdb               1  GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPG   60
1rhoa.pdb               1  -------------------------------VAV--SAD-PNVPNVVVTGLTLVCSSAPG   26
                                                                   P  PNVVVT LTLVC SAPG

1ds6b.pdb              61  PITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF  120
1rhoa.pdb              27  PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSG-KYIEHTYRKGVKIDKTDY   85
                           P   DLTGDLE  KK   VLKEG EYR KI F VNR IVSG KY  HTYR GVK DK   

1ds6b.pdb             121  MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWG  179
1rhoa.pdb              86  -VGSYGPRAEEYEFLTPVEEAPKG-LARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWK  142
                            VGSYGPR EEYEFLTPVEEAPKG LARG Y  KS FTDDDK DHLSWEWNL IKK W 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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