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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 15:26:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Rhodanese.html
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#====================================
# Aligned_structures: 6
#   1: 1c25.pdb
#   2: 1e0ca1.pdb
#   3: 1e0ca2.pdb
#   4: 1qb0a.pdb
#   5: 1rhs1.pdb
#   6: 1rhs2.pdb
#
# Length:        239
# Identity:        4/239 (  1.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      9/239 (  3.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          138/239 ( 57.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c25.pdb                1  ------MLIG-------DFSKGYL-FHTVAGKHQDLKYISPEIMASVLNG-KFANLIKEF   45
1e0ca1.pdb              1  ----------MDDFASL------------------PLVIEPADLQARL-S-----AP-EL   25
1e0ca2.pdb              1  G--GPV-------------ALSLHD----------EPTASRDYLLGRLGA------A-DL   28
1qb0a.pdb               1  -DHR--ELIG-------DYSKAFL-LQTVDGKHQDLKYISPETMVALLTG-KFSNIVDKF   48
1rhs1.pdb               1  -----------------VHQVLY------------RALVSTKWLAESVRAGKV--GP-GL   28
1rhs2.pdb               1  ---AIF-------------KATLNR----------SLLKTYEQVLENLES------K-RF   27
                                                                          l            

1c25.pdb               46  VIIDCR--------YPYEYEG-------------GHIKGAVNLHM-E-------------   70
1e0ca1.pdb             26  ILVDLT--------SAARYAE-------------GHIPGARFVDPKRTQLGQPPAP-GLQ   63
1e0ca2.pdb             29  AIWDAR--------SPQEYRGEKVLA-----AKGGHIPGAVNFEWTAAMDPSR-A--LRI   72
1qb0a.pdb              49  VIVDCR--------YPYEYEG-------------GHIKTAVNLPL-E-------------   73
1rhs1.pdb              29  RVLDASWYSPGTREARKEYLE-------------RHVPGASFFDIEECRDKASPY-EVML   74
1rhs2.pdb              28  QLVDSR--------AQGRYLGTQPE-PDAVGLDSGHIRGSVNMPFMNFLTE---D--GFE   73
                              D              Y               gHi ga                    

1c25.pdb               71  ---EEVEDFLLKKPIVPTDG-KRVIVVFHCEF---SSERGPRMCRYVRERDRLGNEYPKL  123
1e0ca1.pdb             64  PPREQLESLFGELG---HRP--EAVYVVYDDE--GG-GWAGRFIWLLDVIG---------  106
1e0ca2.pdb             73  RT--DIAGRLEELG---ITP--DKEIVTH-Q---TH-HRSGLTYLIAKALG---------  111
1qb0a.pdb              74  ---RDAESFLLKSPIAPCSLDKRVILIFHCEF---SSERGPRMCRFIRERDRAVNDYPSL  127
1rhs1.pdb              75  PSEAGFADYVGSLG---ISN--DTHVVVYDGDDLGS-FYAPRVWWMFRVFG---------  119
1rhs2.pdb              74  KSPEELRAMFEAKK---VDL--TKPLIAT-R---KG-VTACHIALAAYLCG---------  114
                                                                                       

1c25.pdb              124  HYPELYVLKGGYKEFFMKC-QSYCEPPSYRPMHHEDFKE--------------------  161
1e0ca1.pdb            107  -QQRYHYLNGGLTAWLAED--------RPLSRELPAPA---------------------  135
1e0ca2.pdb            112  -YPRVKGYAGSWGEWGNH---P-----DTPVEL--------------------------  135
1qb0a.pdb             128  YYPEMYILKGGYKEFFPQH-PNFCEPQDYRPMN------H-EAFKDELKTFRLKTRSW-  177
1rhs1.pdb             120  -HRTVSVLNGGFRNWLKEG--------HPVTSEPSRPE--------------------P  149
1rhs2.pdb             115  -KPDVAIYDGSWFEWFHRAPPE-----TWVSQG------KG------------------  143
                                    G                                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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