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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:03:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L18p.html
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#====================================
# Aligned_structures: 2
#   1: 1ilya.pdb
#   2: 1jj2m.pdb
#
# Length:        187
# Identity:       26/187 ( 13.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/187 ( 13.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           98/187 ( 52.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ilya.pdb               1  ------------------------------RLRLSVFRSLKHIYAQIIDDE-K-GVTLVS   28
1jj2m.pdb               1  ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLAS   60
                                                           RL    S KH  AQ          TL S

1ilya.pdb              29  ASSLALK---LKGN--KTEVARQVGRALAEKALALGIKQVAFDRGPYKY---HGRVKALA   80
1jj2m.pdb              61  AHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGS-KVFAIQ  119
                           A S  L              A   G      A   G      D G          V A  

1ilya.pdb              81  EGAREGGLEF--------------------------------------------------   90
1jj2m.pdb             120  EGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETL  179
                           EGA   GL                                                    

1ilya.pdb                  -------     
1jj2m.pdb             180  LDGDIEL  186
                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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