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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:03:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L2.html
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#====================================
# Aligned_structures: 2
#   1: 1jj2a.pdb
#   2: 1rl2a.pdb
#
# Length:        142
# Identity:       60/142 ( 42.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     60/142 ( 42.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/142 (  6.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jj2a.pdb               1  SHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDE   60
1rl2a.pdb               1  --QYRIIDFKRDK---DGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVG-E   54
                              Y      R     D I G V  IE DP RSA  A     DG  R I AP    VG E

1jj2a.pdb              61  LQVGVDAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVK  120
1rl2a.pdb              55  I-SGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVR  113
                              G DA I  GN LPL  IP G  V N E  PG GG   RA G  AQ L        V 

1jj2a.pdb             121  LPSGEMKRLDPQCRATIGVVGG  142
1rl2a.pdb             114  LASGEVRILGKC-RATVGEVG-  133
                           L SGE   L    RAT G VG 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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