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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:03:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L4.html
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#====================================
# Aligned_structures: 2
#   1: 1dmga.pdb
#   2: 1jj2c.pdb
#
# Length:        275
# Identity:       36/275 ( 13.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     36/275 ( 13.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          132/275 ( 48.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dmga.pdb               1  AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLS--------DWSKKL-----   47
1jj2c.pdb               1  MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAE   59
                            Q       G   G     D VF      D     V             D    L     

1dmga.pdb              48  -------------------------------------------NKKMKKLALRSALSVKY   64
1jj2c.pdb              60  SFGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATA  119
                                                                      N K   LA RSAL    

1dmga.pdb              65  RE-------------NKLLVLDDLKLE----RPKTKSLKEILQNLQLSDK----------   97
1jj2c.pdb             120  DADLVADRGHEFDRDEVPVVVSD----DFEDLVKTQEVVSLLEALDVHADIDRADETKIK  175
                                              V  D          KT      L  L               

1dmga.pdb              98  ---------------KTLIVLPWKEEGYMNV-KLSGRNLPDVKVIIADNPNNSKNGEKAV  141
1jj2c.pdb             176  AGQGSARGRKYRRPASILFVTSDE-------PSTAARNLAGADVATA-------------  215
                                            L V                RNL    V  A             

1dmga.pdb             142  RIDGLNVFDMLK----YDYLVLTRDMVSKIEEVLG  172
1jj2c.pdb             216  --SEVNTEDLAPGGAPGRLTVFTESALAEVAER--  246
                                N  D           V T        E   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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