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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:04:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L6.html
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#====================================
# Aligned_structures: 2
#   1: 1jj2e.pdb
#   2: 1rl6a.pdb
#
# Length:        180
# Identity:       39/180 ( 21.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     39/180 ( 21.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           24/180 ( 13.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jj2e.pdb               1  PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMS   60
1rl6a.pdb               1  ---PIEIPAGVTVTVNGNTVTVKGPKGELTRT-FHPDMTITVEGNVITVTRPSDEKHHRA   56
                                EIP  V         TV G  G  TR    PD    V G         D      

1jj2e.pdb              61  TIGTFQSHIENMFHGVTEGWEYGMEVFYSHFP-MQVNVEGDEVVIENFLGEKAPRRTTIH  119
1rl6a.pdb              57  LHGTTRSLLANMVEGVSKGYEKALELVG---VGYRASKQGKKLVLS-V-GYSHPVEIEPE  111
                             GT  S   NM  GV  G E   E              G   V     G   P      

1jj2e.pdb             120  GDTDVEID-GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP------  172
1rl6a.pdb             112  EGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRP---PE-PYKGKGIRYE---GELVRL  164
                                E        V G D   VG  AA I                G             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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