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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:35:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_S30AE.html
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#====================================
# Aligned_structures: 2
#   1: 1imua.pdb
#   2: 1l4sa.pdb
#
# Length:        119
# Identity:       58/119 ( 48.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     58/119 ( 48.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/119 ( 16.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1imua.pdb               1  MTLNITSKQMDITPAIREHLEERLAKLGKWQ-TQLISPHFVLNKVPNGFSVEASIGTPLG   59
1l4sa.pdb               1  -TMNITSKQMEITPAIRQHVADRLAKLEKW-QTHLINPHIILSKEPQGFVADATINTPNG   58
                            T NITSKQM ITPAIR H   RLAKL KW  T LI PH  L K P GF   A I TP G

1imua.pdb              60  NLLASATSDDMYKAINEVEEKLERQLNKLQHKS---ESRRADE---RLKDSFEN-----  107
1l4sa.pdb              59  VLVASGKHEDMYTAINELINKLERQLNKLQH-KGEARRAATSVKDANFVE----EVEEE  112
                            L AS    DMY AINE   KLERQLNKLQH                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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