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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:05:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ricin_B_lectin.html
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#====================================
# Aligned_structures: 2
#   1: 1abrb.pdb
#   2: 2aaib.pdb
#
# Length:        268
# Identity:      157/268 ( 58.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    157/268 ( 58.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            7/268 (  2.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1abrb.pdb               1  IVE-KSKICSSRYEPTVRIGGRDGMCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSD   59
2aaib.pdb               1  ---ADVCM---DPEPIVRIVGRNGLCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRD   54
                                        EP VRI GR G CVDV D   HNGN I  W CK     NQLWTLK D

1abrb.pdb              60  KTIRSNGKCLTTYGYAPGSYVMIYDCTSAVAEATYWEIWDNGTIINPKSALVLSAESSSM  119
2aaib.pdb              55  NTIRSNGKCLTTYGYSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATSGNS  114
                            TIRSNGKCLTTYGY PG YVMIYDC  A   AT W IWDNGTIINP S LVL A S   

1abrb.pdb             120  GGTLTVQTNEYLMRQGWRTGNNTSPFVTSISGYSDLCMQAQGSNVWMADCDSNKKEQQWA  179
2aaib.pdb             115  GTTLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGLCLQANSGQVWIEDCSSEKAEQQWA  174
                           G TLTVQTN Y   QGW   NNT PFVT I G   LC QA    VW  DC S K EQQWA

1abrb.pdb             180  LYTDGSIRSVQNTNNCLTSKDHKQGSTILLMGCSNGWASQRWVFKNDGSIYSLYDDMVMD  239
2aaib.pdb             175  LYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVLD  234
                           LY DGSIR  QN  NCLTS             C      QRW FKNDG I  LY   V D

1abrb.pdb             240  VKGSDPSLKQIILWPYTGKPNQIWLTLF  267
2aaib.pdb             235  VRASDPSLKQIILYPLHGDPNQIWLPLF  262
                           V  SDPSLKQIIL P  G PNQIWL LF


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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