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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:08:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RuvA.html
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#====================================
# Aligned_structures: 2
#   1: 1bvsf.pdb
#   2: 1cuk.pdb
#
# Length:        198
# Identity:       58/198 ( 29.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     58/198 ( 29.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           24/198 ( 12.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bvsf.pdb               1  MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-NQGSQARLVTAMVVREDSMTL   59
1cuk.pdb                1  MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL   60
                           MI   RG   E       IE  G GY V         L   G  A   T  VVRED   L

1bvsf.pdb              60  YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRAALADSDVASLTRVPGIGARG  119
1cuk.pdb               61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT  120
                           YGF     R LF  L    GVGP LA A L    A     A     V  L   PGIG   

1bvsf.pdb             120  AERIVLELADKVGPG-----------NAVRGSVVEALVGLGFAAKQAEEATDQVLDGE--  166
1cuk.pdb              121  AERLIVEMKDRF---KGLHGDLFTPTDDAEQEAVARLVALGYKPQEASRMVSKIA---RP  174
                           AER   E  D                       V  LV LG     A             

1bvsf.pdb             167  --ATSSALRAALSLLGKT  182
1cuk.pdb              175  DASSETLIREALRAAL--  190
                                   R AL      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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