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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:18:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SRP54.html
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#====================================
# Aligned_structures: 2
#   1: 1ffh.pdb
#   2: 1fts.pdb
#
# Length:        314
# Identity:       94/314 ( 29.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     94/314 ( 29.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           46/314 ( 14.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ffh.pdb                1  F---QQ----LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVER   53
1fts.pdb                1  -RSLLKTKENLGSGFISLFR---GKK-I----DDDLFEELEEQLLIADVGVETTRKIITN   51
                                     L            G   I          E    L  ADV  E TR     

1ffh.pdb               54  VREEALGKQVLESLTPAEVILATVYEALKEALGGEA---RLPVL--KDRNLWFLVGLQGS  108
1fts.pdb               52  LTEGASRKQL--R--DAEALYGLLKEEMGEILA---KVDEPLNVEGKAPFVILMVGVNGV  104
                             E A  KQ       AE       E   E L              K       VG  G 

1ffh.pdb              109  GKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIR  168
1fts.pdb              105  GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI  164
                           GKTTT  KLA      G    L A DT R AA EQL   G     PV     G    S  

1ffh.pdb              169  RRVEEKARLEARDLILVDTAGRLQ-I-DEPLMGELARLKEVL------GPDEVLLVLDAM  220
1fts.pdb              165  FDAIQAAKARNIDVLIADTAGR--LQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS  222
                                 A     D    DTAGR        LM EL     V        P EV L  DA 

1ffh.pdb              221  TGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIY----FAG---LEP  273
1fts.pdb              223  TGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRP  282
                           TGQ A S A  F E VG TG  LTKLDG A GG   S     G PI           L P

1ffh.pdb              274  FYPERLAGRILGMG  287
1fts.pdb              283  FKADDFIEALFAR-  295
                           F             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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