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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:19:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/START.html
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#====================================
# Aligned_structures: 2
#   1: 1em2a.pdb
#   2: 1jssa.pdb
#
# Length:        216
# Identity:       43/216 ( 19.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/216 ( 19.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/216 ( 10.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1em2a.pdb               1  SFSAQEREYIRQGKEATAVVDQILAQEE-NWKFEKNNEYGDTVYTIEVPFH-GKTFILKT   58
1jssa.pdb               1  ---------ASISTKLQNTLIQYHSIEEDEWRVAKKAK-DVTVWRKPSEEFNGYLYKAQG   50
                                                Q    EE  W   K      TV         G       

1em2a.pdb              59  FLPCPAELVYQEVILQPE-RVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF  117
1jssa.pdb              51  VMDDVVNNVIDHIRP-GPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREF  109
                                   V          R  W    T    L   E N        AG      SPR F

1em2a.pdb             118  VNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGG-IVLKSASNPRVCTFVWILN  176
1jssa.pdb             110  VDFSYTVGYEEGLLSCGVSVEWS-ET-RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQ  167
                           V            LS G     S        VRG N P G         P          

1em2a.pdb             177  TDLKGRLPRYLIHQSLAAT-FEFAFHLRQRISELGA  211
1jssa.pdb             168  TDLRGMIPQSAVDTAMASTLANFYSDLRKGLR----  199
                           TDL G  P        A T   F   LR        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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