################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 23:20:00 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/STAS.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1buz.pdb # 2: 1h4xa.pdb # # Length: 124 # Identity: 34/124 ( 27.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 34/124 ( 27.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/124 ( 17.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1buz.pdb 1 SLGIDMNVKESVLCIRLTGELDHHTAETLKQKVTQSLEKDDI---RHIVLNLEDLSFMDS 57 1h4xa.pdb 1 AFQLEM-VTRETVVIRLFGELDHHAVEQIRAKISTAIFQ---GAVTTIIWNFERLSFMD- 55 M V IRL GELDHH E K I N E LSFMD 1buz.pdb 58 SGLGVILGRYKQIKQIGGEMVVCAISPAVKRLFDMSGLFKIIRFE----QSEQQALLTLG 113 1h4xa.pdb 56 SGVGLVLGRMRELEAVAGRTILLNPSPTMRKVFQFSG-LGPWM--MDATEEEAIDRV--- 109 SG G LGR G SP F SG E 1buz.pdb 114 VAS- 116 1h4xa.pdb 110 ---R 110 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################