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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:10:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Sec1.html
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#====================================
# Aligned_structures: 2
#   1: 1dn1a.pdb
#   2: 1epua.pdb
#
# Length:        578
# Identity:      329/578 ( 56.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    329/578 ( 56.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           73/578 ( 12.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dn1a.pdb               1  IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK   60
1epua.pdb               1  -ALKTAVHEKI-NDVVLAVKKNAEWKVLIVDQLS-R-VSACCK-HEI-SEGITLVEDINR   54
                             LK  V EKI  DV   VKK  EWKVL VDQLS R  S CCK   I  EGIT VEDIN 

1dn1a.pdb              61  RREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRA  120
1epua.pdb              55  RREPLPLLEAVYLITPTEESVKCL-ADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTT  113
                           RREPLP LEAVYLITP E SV  L  DF  P    YR AH FFT  CP  LF EL KS  

1dn1a.pdb             121  AKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATL  180
1epua.pdb             114  ARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATL  173
                           A  IKTL EINIAFLPYESQ  SLDS D FQ  Y P  AQ   P  ER AEQIATLCATL

1dn1a.pdb             181  KEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTM-GEGPDKARSQLLILDRGFDPSSP  239
1epua.pdb             174  GEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTGEG--PQKDRSQLLILDRGFDPISP  231
                            EYP VRYR     NA  AQL Q KLDAY ADDPT  G  P K RSQLLILDRGFDP SP

1dn1a.pdb             240  VLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQE  299
1epua.pdb             232  LLHELTFQA-AYDLLPIENDVYKY---------EVLLDE--K-DDLWVERHQHIAVVSQN  278
                            LHELTFQA  YDLLPIENDVYKY                   D     RH HIA VSQ 

1dn1a.pdb             300  VTRSLKDFSSSKRMMRDLSQMLKKMP-----------QYQKELSKYSTHLHLAEDCMKHY  348
1epua.pdb             279  VTKKLKQFADEKR-------------GIKDLSQLKKPQYQKELSKYSTHLHLAEDC-KQY  324
                           VT  LK F   KR                        QYQKELSKYSTHLHLAEDC K Y

1dn1a.pdb             349  QGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGI  408
1epua.pdb             325  QQHVDKLCKVEQDLA-GTDADGEKIRDH-RNIVPILLDQKISAYDKIRIILLYIIHKGGI  382
                           Q  VDKLC VEQDLA GTDA GEKI D  R IVPILLD   S YDKIRIILLYI  K GI

1dn1a.pdb             409  TEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTL-RRRSKPE------RKERISEQ  461
1epua.pdb             383  SEENLAKLVQHAHIPAEEKWIIND-QNLGVPIIQD-GGRRKIPQPYHTHNRKE-RQADH-  438
                            EENL KL QHA IP E   II     LGVPI  D    R    P               

1dn1a.pdb             462  TYQLSRWTPI-IKDIMEDTIEDKLDTKHYPYISTR-RSGPRLIIFILGGVSLNEMRCAYE  519
1epua.pdb             439  -TYQSRWTPYKD---IEAAVEDKLDTRHYPFLNGGGKSGPRLIIFVVGGISYSE-RSAYE  493
                               SRWTP       E   EDKLDT HYP       SGPRLIIF  GG S  E R AYE

1dn1a.pdb             520  VTQA-NGKWEVLIGSTHILTPQKLLDTLKKLNKTDEEI  556
1epua.pdb             494  VTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP----  527
                           VTQ     WEV  GSTHILTP  LL  L K        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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