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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:12:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Sec7.html
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#====================================
# Aligned_structures: 2
#   1: 1bc9.pdb
#   2: 1pbv.pdb
#
# Length:        209
# Identity:      159/209 ( 76.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    159/209 ( 76.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/209 ( 11.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bc9.pdb                1  MKN-------MQRNKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNK   53
1pbv.pdb                1  ---ANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNK   57
                                      QRN   AMGRKKFNMDPKKGIQFL EN LL NT E IA FLYKGEGLNK

1bc9.pdb               54  TAIGDYLGERDEFNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPG-EAQKIDRMMEAF  112
1pbv.pdb               58  TAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQ-KIDRMMEAF  116
                           TAIGDYLGER E N  VLHAFV LHEFTDLNLVQALRQFLWSFRLPG    KIDRMMEAF

1bc9.pdb              113  AQRYCQCNNGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLP  172
1pbv.pdb              117  AQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLP  176
                           AQRYC CN GVFQSTDTCYVLSFA IMLNTSLHNPNV DKP  ERF AMNRGIN GGDLP

1bc9.pdb              173  EELLRNLYESIKNEPFKIPELEHHHHHH-  200
1pbv.pdb              177  EELLRNLYDSIRNEPFKI----------P  195
                           EELLRNLY SI NEPFKI           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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