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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:13:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Seedstore_7s.html
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#====================================
# Aligned_structures: 2
#   1: 2cav.pdb
#   2: 2phla.pdb
#
# Length:        377
# Identity:      165/377 ( 43.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    165/377 ( 43.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           48/377 ( 12.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


2cav.pdb                1  NNPYL-FRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHS   59
2phla.pdb               1  DNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA   60
                            NP      N   TLFKNQ G  R LQRF      L NL DYR  E  SKP TLLLP   

2cav.pdb               60  DSDLLVLVLEGQAILVLVNPD-GRDTYKLDQG-----DAIKIQAGTPFYLINPDNNQNLR  113
2phla.pdb              61  DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLR  120
                           D  LL  V  G AILVLV PD  R    L        D  KI AGT FYL NPD    LR

2cav.pdb              114  ILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ---EEQ  170
2phla.pdb             121  IIQLAMPVNN-PQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQ-Q  178
                           I   A           FFLSST    SYL  FSK  LEAS  S   EI   L       Q

2cav.pdb              171  EGVIVKMP-KDDKPFNLRSRDP----------IYSNNYGKLYEITPEKNSQLRDLDILLN  219
2phla.pdb             179  EGVIVNIDSE--------QIK-ELSKHAKSSNTIGNEFGNLTERT------DNSLNVLIS  223
                           EGVIV                              N  G L E T         L  L  

2cav.pdb              220  CLQMNEGALFVPHYNSRATVILVANEGRAEVELVGL-----QLRRYAATLSEGDIIVIPS  274
2phla.pdb             224  SIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGETLEYESYRAELSKDDVFVIPA  283
                              M EGALFVPHY S A VILV NEG A VELVG          Y A LS  D  VIP 

2cav.pdb              275  SFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIRQI-----PRQVSDLTFPGSGEE  329
2phla.pdb             284  AYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDE  343
                             PVA KA S  N  G G NA NN RN LAG   NVI  I        V  LTF GSG E

2cav.pdb              330  VEELLENQKESYFVDGQ  346
2phla.pdb             344  VMKLINKQSGSYFVDAH  360
                           V  L   Q  SYFVD  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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