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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:41:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SpoU_methylase_C.html
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#====================================
# Aligned_structures: 2
#   1: 1gz0a.pdb
#   2: 1ipaa.pdb
#
# Length:        180
# Identity:       43/180 ( 23.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/180 ( 23.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/180 ( 24.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gz0a.pdb               1  YQENDLPDLIASL--------DQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRS   52
1ipaa.pdb               1  -------------TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG---   44
                                                     L   G   P NLGA LRSADAAG  AV V     

1gz0a.pdb              53  AQ----LNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTLYQSK-  105
1ipaa.pdb              45  --GVDLYSPQVIRNSTGVVFSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANL  101
                                           G   S                   N   V T   A         

1gz0a.pdb             106  TGRLALVGA--EGE-GRRLTREHCDELISIPAG---SVSSLNVSVATGICLFEAVRQRS-  158
1ipaa.pdb             102  RPPVAIAV-GPEHEGLRAAWLEAAQTQVRIPM-QGQA-DSLNVSVSAALLLYEALRQRLL  158
                               A      E E  R    E       IP        SLNVSV     L EA RQR  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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