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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:41:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Sua5_yciO_yrdC.html
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#====================================
# Aligned_structures: 2
#   1: 1hrua.pdb
#   2: 1jcua.pdb
#
# Length:        224
# Identity:       40/224 ( 17.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     40/224 ( 17.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           56/224 ( 25.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hrua.pdb               1  NNLQ------------RDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVRLLELKQ   48
1jcua.pdb               1  ----MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVK   56
                                            D    AI V        YPT    G G     E AVR L    

1hrua.pdb              49  -RPVDKGLILIAANYEQLKPYIDDTLTDVQRETIFSRWPGPVTFVFPAPAT---TPRWLT  104
1jcua.pdb              57  GRSPHKPVSICVSCVDEIPRFSRP-S-GDAMELMERILPGPYTVVLER---NELIPDVIT  111
                            R   K                         E      PGP T V          P   T

1hrua.pdb             105  GRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGL----PPCRTVDEVRA-QFGAAFP  159
1jcua.pdb             112  GGSSRVGIRVPDDEICRRIAA--RFPVTATSAN----ISGKPPSPRLEEIVRDLDAVD-L  164
                           G       RV D             P   TSAN        PP     E           

1hrua.pdb             160  VVPGETGGRLNPSEIRDAL--TGE-----LFR------------  184
1jcua.pdb             165  VLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPVLLRGAGDV  208
                           V          PS   D                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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