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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:25:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TGT.html
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#====================================
# Aligned_structures: 2
#   1: 1iq8a.pdb
#   2: 1k4ga.pdb
#
# Length:        387
# Identity:       82/387 ( 21.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     82/387 ( 21.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           67/387 ( 17.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1iq8a.pdb               1  -KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQM----VVEPKELEKMGFEII   55
1k4ga.pdb               1  RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTA---ATVKALKPETVRATGADII   57
                                F I AR G  R G  E     I TPA MPV             P      G  II

1iq8a.pdb              56  ITNSYIIYKDEELRRKALEL-GIHRMLDYNGIIEVDSGSFQLMKYG--------------  100
1k4ga.pdb              58  LGNTYHLMLRP-GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSL-SSLTKQSEEGVTFK  115
                             N Y              L G H        I  DSG  Q M                 

1iq8a.pdb             101  ----SIE--VSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEI  154
1k4ga.pdb             116  SHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDA  175
                                     S    IE QH  G DI    D  TP  A    A    E     A      

1iq8a.pdb             155  KE---------IPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESY-RFRDV  204
1k4ga.pdb             176  F-DSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVG----EGQDEM  230
                                             QGS    LR   A  L    F     GG              

1iq8a.pdb             205  VDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTK  264
1k4ga.pdb             231  FRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPI  290
                                 S   L  D P  L G G P     AV  G D FD              T  G  

1iq8a.pdb             265  RLDELDY------------FPCSCPVCSKYTPQELREM----PKEERTRLLALHNLWVIK  308
1k4ga.pdb             291  NIR----NARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGE-ILGAMLMTEHNIAFYQ  345
                                                C C VC K                    L   HN     

1iq8a.pdb             309  EEIKRVKQAIKEGELWRLVDERARSHP  335
1k4ga.pdb             346  QLMQKIRDSISEGRFSQFAQDFRARYF  372
                                    I EG              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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