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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:31:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TNFR_c6.html
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#====================================
# Aligned_structures: 2
#   1: 1cdf.pdb
#   2: 1exta.pdb
#
# Length:        163
# Identity:       30/163 ( 18.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     30/163 ( 18.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/163 ( 27.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cdf.pdb                1  T-ACREKQYLI--N-SQCCSLCQPGQKLVSDC-TEFTETECLPCGESEFLDTWNRETHCH   55
1exta.pdb               1  -SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCL   59
                              C    Y    N S CC  C  G  L  DC      T C  C    F    N   HC 

1cdf.pdb               56  QHKYCDPNLGLRVQQKGTSETDTICTCEEGWHC-TSEAC--ESCVLHRSCSPGFGVKQIA  112
1exta.pdb              60  SCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSE-NLFQCFNCSLCL-NGTVHLSC  117
                               C    G       T   DT C C                C     C     V    

1cdf.pdb              113  TGVSDTICE----------------------------------  121
1exta.pdb             118  QEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIEN  160
                                T C                                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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