################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Mon Jul 25 15:44:04 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TPK_catalytic.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1ig0a.pdb # 2: 1ig3a.pdb # # Length: 230 # Identity: 48/230 ( 20.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 48/230 ( 20.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 70/230 ( 30.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1ig0a.pdb 1 EE--CIENPERIKIGTD-LINIRNKMNLKELIHPN--EDENSTLLILNQKIDIPRPLFYK 55 1ig3a.pdb 1 --HSSGLV--------PRGSHMEHAFTPLEPLL--PTGNLKYCLVVLNQPL-DA--RFRH 45 E L LNQ F 1ig0a.pdb 56 IWKLHDLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTII 115 1ig3a.pdb 46 LWKKALLRACADGGANHLYDLTE-G--ERESFLPEFVSGDFDSIRPEVKEYYTKKGCDLI 102 WK L CADG AN LYD R LP GD DS V YY K I 1ig0a.pdb 116 KQTTQYSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLV 175 1ig3a.pdb 103 STPDQDHTDFTKCLQVLQRKIEEK------------------------------------ 126 Q TDFTKC 1ig0a.pdb 176 FSKVTP----ISLLALGGIGGRFDQTVHSITQLYTLSENASYFKLCYMTP 221 1ig3a.pdb 127 ------ELQVDVIVTLGGLGGRFDQIMASVNTLFQATHIT-PVPIIIIQK 169 LGG GGRFDQ S L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################