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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:41:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Topoisom_bac.html
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#====================================
# Aligned_structures: 2
#   1: 1cy9a.pdb
#   2: 1i7da.pdb
#
# Length:        291
# Identity:       55/291 ( 18.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/291 ( 18.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           65/291 ( 22.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cy9a.pdb               1  FVPEEFWEVDASTTTPSGEALALQVTHQND-------KPFRPVNKEQTQAAVSLLEKA-R   52
1i7da.pdb               1  FVAKDFFEVKAHIVTPADERFTAIWQPSE-ACEPYQDEEGRLLHRPLAE---HVVNRISG   56
                           FV   F EV A   TP  E                     R                   

1cy9a.pdb              53  YSV--LEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYE-AGYITYMRT  109
1i7da.pdb              57  QPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRS  116
                                    DK        PF  S LQ  A  R G          Q LYE    IT  R 

1cy9a.pdb             110  DSTNLS-------QDAVNMVR---GYISDNFGKKYLPESPNQYAS------------HEA  147
1i7da.pdb             117  DCRYLPEEHFAGRHAVMNAISVHAPDLLP---QPVVDPDI-----RNRCWDDKKVDAHHA  168
                           D   L            N                                       H A

1cy9a.pdb             148  IRPSD-VNVMAESLK--DMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKA  204
1i7da.pdb             169  IIPTARSS-------AINLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVA  221
                           I P                     K Y LI RQ        A                 A

1cy9a.pdb             205  RGRILRFDGWTKVM----------DRILPAVNKGDALTLVELTPAQHFTKP  245
1i7da.pdb             222  KARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQP  272
                             R L   GW                 LP V KGD L           T P


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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