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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:20:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Toprim.html
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#====================================
# Aligned_structures: 3
#   1: 1d6ma.pdb
#   2: 1dd9a.pdb
#   3: 1ecl.pdb
#
# Length:        153
# Identity:        8/153 (  5.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     31/153 ( 20.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           80/153 ( 52.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d6ma.pdb               1  MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQ-VVTWCIGHLLEQA----------   49
1dd9a.pdb               1  NRLLVVE----GYMDVVALA------------QYGINYAVASLG----------------   28
1ecl.pdb                1  KALVIVESPAKAKTINKYLG------------SD-Y-VVKSSVGHIRDLPDERGALVNRM   46
                            rL ivE    a  i   L                  vv  s G                

1d6ma.pdb              50  --QPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQ--LNV-IKRFLHEASEIVHAGDP  104
1dd9a.pdb              29  -------------------------------------STTADHIQLLFRATNNVICCYDG   51
1ecl.pdb               47  GVDPWHN----------------WEAHYEVLPGKEKV--VSE-LKQLAEKADHIYLATDL   87
                                                                      ik l   a  i  a D 

1d6ma.pdb             105  DREGQLLVDEVLDYLQ--LAPEKRQQVQRCLIN  135
1dd9a.pdb              52  DRAGRDAAWRALETALPYMTDGR--QLRFMFLP   82
1ecl.pdb               88  DREGEAIAWHLREVIG--GDD---ARYSRVVFN  115
                           DReG   aw  le       d    q  r   n


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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