################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 23:46:42 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Transglut_core.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1evua.pdb # 2: 1g0da.pdb # # Length: 333 # Identity: 143/333 ( 42.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 143/333 ( 42.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 27/333 ( 8.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1evua.pdb 1 DAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLYVMDRAQM--- 57 1g0da.pdb 1 DMVYLPDESKLQEYVMNEDGVIYMGTWDYIRSIPWNYGQFEDYVMDICFEVLDNS--PAA 58 D VYL E EYV N GVI G I W YGQFED D C V D 1evua.pdb 58 ------DLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDILLE 111 1g0da.pdb 59 LKNSEMDIEHRSDPVYVGRTITAMVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPILQQ 118 D R P V R AMVN D GVL G W Y GV P WTGSV IL 1evua.pdb 112 YRSS-ENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNV 170 1g0da.pdb 119 WSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLES 178 PV YGQCWVFA V T LRCLGIP R TN SAHD D NL D L E 1evua.pdb 171 NSKLTKD-SVWNYHCWNEAWMTRPDLPVGFGGWQAVDSTPQENSDG-MYRCGPASVQAIK 228 1g0da.pdb 179 LDSRQRSDSSWNFHCWVESWMSREDLPEGNDGWQVLDPTPQ-ELSDGEFCCGPCPVAAIK 237 S WN HCW E WM R DLP G GWQ D TPQ CGP V AIK 1evua.pdb 229 HGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHVVENVDAT-HIGKLIVTKQIGGDGMMDI 287 1g0da.pdb 238 EGNLGVKYDAPFVFAEVNADTIYWIVQKDGQRRKI-TEDHASVGKNISTKSVYGNHREDV 296 G DAPFVFAEVN D IY KDG GK I TK G D 1evua.pdb 288 TDTYKFQEGQEEERLALETALMYGAK-KPLNT- 318 1g0da.pdb 297 TLHYKYPEGSQKEREVYKKAGR----RV----T 321 T YK EG ER A #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################