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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:47:14 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Transpeptidase.html
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#====================================
# Aligned_structures: 2
#   1: 1k25a.pdb
#   2: 1qmea.pdb
#
# Length:        371
# Identity:      276/371 ( 74.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    276/371 ( 74.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           59/371 ( 15.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1k25a.pdb               1  TLSSPLQSFMETQMDAFLEKVKGKYMTATLVSAKTGEILATTQRPTFNADTKEGITEDFV   60
1qmea.pdb               1  TISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFV   60
                           T SSPLQSFMETQMDAF EKVKGKYMTATLVSAKTGEILATTQRPTF ADTKEGITEDFV

1k25a.pdb              61  WRDILYQSNYEPGSAMKVMTLASSIDNNTFPSGEY-------------------------   95
1qmea.pdb              61  WRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGG  120
                           WRDILYQSNYEPGS MKVM LA  IDNNTFP GE                          

1k25a.pdb              96  ------FNSSELSSNVGMSLLEQKMGDATWLDYLKRFKFGVPTRFGLTDEYAGQLPADNI  149
1qmea.pdb             121  RMMTFSQGFAH-SSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPADNI  179
                                       SSNVGM LLEQKMGDATWLDYL RFKFGVPTRFGLTDEYAGQLPADNI

1k25a.pdb             150  VSIAQSSFGQGISVTQTQMLRAFTAIANDGVMLEPKFISAIYDTNNQSVRKSQKEIVGNP  209
1qmea.pdb             180  VNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNP  239
                           V IAQSSFGQGISVTQTQM RAFTAIANDGVMLEPKFISAIYD N Q  RKSQKEIVGNP

1k25a.pdb             210  VSKEAASTTRNHMILVGTDPL-------------IITVPGQNVAVKSGTAQIADEKNGGY  256
1qmea.pdb             240  VSKDAASLTRTNMVLVGTDP-VYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGY  298
                           VSK AAS TR  M LVGTDP                TVPGQNVA KSGTAQIADEKNGGY

1k25a.pdb             257  LVGSTNYIFSAVTMNPAENPDFILYVTVQQPEHYSGIQLGEFATPILERASAMKESLNLQ  316
1qmea.pdb             299  LVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLN--  356
                           LVG T YIFSAV M PAENPDFILYVTVQQPEHYSGIQLGEFA PILERASAMK SLN  

1k25a.pdb             317  SPAKNLDKVT-  326
1qmea.pdb             357  ----------L  357
                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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