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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:57:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Trypan_glycop.html
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#====================================
# Aligned_structures: 2
#   1: 1vsga.pdb
#   2: 2vsga.pdb
#
# Length:        422
# Identity:       51/422 ( 12.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     51/422 ( 12.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          124/422 ( 29.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1vsga.pdb               1  AAEKGFKQAFWQPLCQVSEELDDQPKGALFTLQAAASKIQKMRDAALRASIYAEINHGTN   60
2vsga.pdb               1  -THFGVKYELWQPECELTAELRKTAGVAKMKVNSDLNSFKTLELTKMKLLTFAAKFPES-   58
                               G K   WQP C    EL      A                        A       

1vsga.pdb              61  RAKAAVIVANHYAMK-------------------ADSGLEALKQTLSSQEVTATATASYL  101
2vsga.pdb              59  ---------------KEALTLRALEAALNTDLRALRDN----IANGIDRAVRATAYASEA   99
                                                                             V ATA AS  

1vsga.pdb             102  KGRIDEYLNLLLQTKESGT-SGCMMDTSGTNTVTKAGGTIGG-----VPCKLQLSPI-Q-  153
2vsga.pdb             100  AGALFSGIQTLHDATDG--TTYCLSASGQGSNGN--------AAMASQGCK-PLALPELL  148
                            G        L           C                          CK  L      

1vsga.pdb             154  PKRPA-ATYLGKAGYVGLTRQADAANNFH--DNDAECRLASGHNTNGLG---KSGQ--LS  205
2vsga.pdb             149  TEDSYNTDVISDKGFPKISPLTN--AQG-QGKSGE-CGLFQA---ASGAQATNTGVQFSG  201
                                        G                      C L               G     

1vsga.pdb             206  -AAVTMAAGYVTVANSQTAVTVQALDALQEASG--AAH---QPWIDAWKAKKALT---GA  256
2vsga.pdb             202  GSRINLGLGAIVAS-AAQQPTRPDLSDFS----GTARNQADTLYGKAHASITELLQLAQG  256
                                   G           T   L          A          A      L      

1vsga.pdb             257  E----TAEFRNETA-GIAGKTGVTKLVEEAL----LKKKDSEAS-----EIQTELKKYFS  302
2vsga.pdb             257  PKPGQTEVETM---KLLAQKTAALDSIKFQLAASTG-KK-----TSDYKEDENLKTEYFG  307
                                T           A KT         L      KK          E       YF 

1vsga.pdb             303  GHENEQWTAIEKLISEQPVAQNLVGDN--QPTKLGELEGNAKLTTILAYYRMETAGKFEV  360
2vsga.pdb             308  -KTESNIEALWNKVKEEKVK-GADPEDPSKESKISDLNTEEQLQRVLDYYAVA-------  358
                                   A      E  V             K   L     L   L YY          

1vsga.pdb             361  LT  362
2vsga.pdb                  --     
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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