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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:01:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/UCH.html
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#====================================
# Aligned_structures: 2
#   1: 1cmxa.pdb
#   2: 1uch.pdb
#
# Length:        243
# Identity:       59/243 ( 24.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/243 ( 24.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           66/243 ( 27.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cmxa.pdb               1  RAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPI---N   57
1uch.pdb                1  -RWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGM-DPELLSMVPRPVCAVLLLFPITEKY   58
                               P E NPEV   F   LGL   W   D Y    PELL   PRPV A  LLFPI    

1cmxa.pdb              58  ------------------D--VIWFKQSVKNACGLYAILHSLSNNQSLLEPG--SDLDNF   95
1uch.pdb               59  EVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKF  118
                                                V   KQ   NACG     H   NN         S L  F

1cmxa.pdb              96  LKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADT---NLHYITYVE  152
1uch.pdb              119  LEESVSM----------SPEERARYLENYD-A----------------IRVDLHFIALVH  151
                           L                                                   LH I  V 

1cmxa.pdb             153  ENGGIFELDGRNLSGPLYLGKSDPTATDLIE-QELVRVRVASYMENANEEDVLNFAMLGL  211
1uch.pdb              152  VDGHLYELDGRKPFPI-NHGETSDET-----LLEDAIEVCKKFMERDP--DELRFNAIAL  203
                             G   ELDGR        G             E         ME     D L F    L

1cmxa.pdb             212  GPN  214
1uch.pdb              204  SAA  206
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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