################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:02:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/UPP_synthetase.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1f75a.pdb
#   2: 1jp3a.pdb
#
# Length:        222
# Identity:       79/222 ( 35.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     79/222 ( 35.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/222 (  7.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f75a.pdb               1  NINAA---QIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTL   57
1jp3a.pdb               1  -----LPAHGCRHVAII-DGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTL   54
                                       H AII DGNGRWAK     R  GH  G   VR     A   G   LTL

1f75a.pdb              58  YAFNYLM-KLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLT  116
1jp3a.pdb              55  YAF----SELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT  110
                           YAF      L    L      L   NV    IG                   T  NTGLT

1f75a.pdb             117  LVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDPELLIRTSGE  176
1jp3a.pdb             111  LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEL-NQHV-CHELAPVDLVIRTGGE  168
                           L  A NYGGR  I   V   AE    G    D I E   N            L IRT GE

1f75a.pdb             177  ERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNR-  217
1jp3a.pdb             169  HRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE  210
                            R SNFL WQ  Y E  F D  WPDF E           NR 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################