################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 00:05:20 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/UvrD-helicase.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1pjr.pdb # 2: 1uaaa.pdb # # Length: 665 # Identity: 246/665 ( 37.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 246/665 ( 37.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 71/665 ( 10.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1pjr.pdb 1 MNFLSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNIL 60 1uaaa.pdb 1 ----------RLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIA 50 LN QQ AV GP L AGAGSGKTRV T IA L I 1pjr.pdb 61 AITFTNKAAREMRERVQSLLGG-AAEDVWIST-FHSMCVRILRRDIDRIGINRNFSILDP 118 1uaaa.pdb 51 AVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAA-LGMKANFSLFDD 109 A TFTNKAAREM ERV LG A IST I R G NFS D 1pjr.pdb 119 TDQLSVMKTILKEKNIDPKKFEP---RTILGTISAAKNELLPPEQFAKR--YYEK-VVSD 172 1uaaa.pdb 110 TDQLALLKELTEGLI----EDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAH 165 TDQL K TIS KN L P Q A 1pjr.pdb 173 VYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTL 232 1uaaa.pdb 166 CYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYEL 225 Y Y L LDFDDLI L V Q K Y DEYQDTN QY L 1pjr.pdb 233 VKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQA 292 1uaaa.pdb 226 VKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKA 285 VK L VGD DQSIY WRGA QN D P KVI LEQNYRS RIL A 1pjr.pdb 293 ANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFA 352 1uaaa.pdb 286 ANILIANNPHVFEKRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYA 345 AN I N KR E G A NE EA V G Y D A 1pjr.pdb 353 VLYRTNAQSRVMEEMLLKANIPYQIVG-GLKFYDRKEIKDILAYLRVIANPDDDLSLLRI 411 1uaaa.pdb 346 ILYRGNHQSRVFEKFLMQNRI-PYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRI 404 LYR N QSRV E L I G F R EIKD LAYLRV NPDDD LRI 1pjr.pdb 412 INVPKRGIGASTIDLFEALGEL----------EMIG------LGAKAAGALAAFRSQLEQ 455 1uaaa.pdb 405 VNTPK---REIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAE 461 N PK LGE L AL F L 1pjr.pdb 456 WTQLQEYVSVTE-LVEEVLDKSGYREMLKA-E--RTIEAQSRLENLDEFLSVTKHFENVS 511 1uaaa.pdb 462 IQRLAEREP--IAAVRDLIHGMDYESWLYETSPSP-KAAEMRMKNVNQLFSWMTEMLEG- 517 L E V Y L A R N S 1pjr.pdb 512 DD-----KSLIAFLTDLALIS--------GDAVMLMTLHAAKGLEFPVVFLIGMEEGIFP 558 1uaaa.pdb 518 S-ELDEPMTLTQVVTRFTLR-DMMEREEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 575 L T L D V LMTLHA KGLEFP V GMEEG P 1pjr.pdb 559 HNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLL 618 1uaaa.pdb 576 HQSSIDEDN-IDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 634 H S D EERRLAYVGITRA EL T R G PSRFL E P L 1pjr.pdb 619 ETASR 623 1uaaa.pdb 635 IW--- 636 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################