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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:08:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/VAT-Nc.html
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#====================================
# Aligned_structures: 2
#   1: 1cz5a.pdb
#   2: 1e32a.pdb
#
# Length:        104
# Identity:       20/104 ( 19.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/104 ( 19.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/104 ( 30.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cz5a.pdb               1  KKVTLAPIIRKDQRL-KFGEGIE--EYVQRAL---IRRPMLEQDNISVPGLTLAGQ---T   51
1e32a.pdb               1  KRIHVLPID---DTVEGITGN--LFEVYLKPYFLEAYRPIRKGDIFLVRG------GMRA   49
                           K     PI                 E           RP    D   V G          

1cz5a.pdb              52  GLLFKVVKTLPSKVPVEIGEETKIEIREEPA----SEVLEEGG-   90
1e32a.pdb              50  -VEFKVVETDP-SPYCIVAPDTVIHCEGEPIKREDEEE-----S   86
                              FKVV T P          T I    EP      E       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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