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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:10:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/WD40.html
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#====================================
# Aligned_structures: 2
#   1: 1erja.pdb
#   2: 1gotb.pdb
#
# Length:        423
# Identity:       62/423 ( 14.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/423 ( 14.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          157/423 ( 37.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1erja.pdb               1  HYLV-----PYNQRANH-----------SKPI-PPFLLDLDSQSVPDALKKQTNDYYILY   43
1gotb.pdb               1  ----SELDQLRQEAEQLKNQIRDARKACADATLSQITNNI--------------------   36
                                                                                       

1erja.pdb              44  NPALPR-EIDVELHKSLDHT----------------------------------------   62
1gotb.pdb              37  ---DPVGRIQMRTRRTLRG-HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI   92
                               P   I       L                                           

1erja.pdb              63  ----SVVCCVKFSNDGEYLATGCN-KTTQVYRVS-D---GSLVARLSDSSD--LYIRSVC  111
1gotb.pdb              93  PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG---HTGYLSCCR  149
                               S V        G Y A G        Y              L        Y     

1erja.pdb             112  FSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  170
1gotb.pdb             150  FL--DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA  207
                           F         T   D     WDIE         GH  D  SL   P     VSG  D   

1erja.pdb             171  RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDTGH  230
1gotb.pdb             208  KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS---  264
                             WD R G C  T                G   A GS D   R  D              

1erja.pdb             231  KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLTCEVTYI--GHKDFVLSVATTQNDEYILSG  288
1gotb.pdb             265  -------------------------------------HDNIICGITSVSFSKSGRLLLAG  287
                                                                         SV         L G

1erja.pdb             289  SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKY  347
1gotb.pdb             288  YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-------GMAVATGSWDSFLKIWN-  339
                             D     WD         L GH N V    V              ATGS D    IW  

1erja.pdb             348  KKI  350
1gotb.pdb                  ---     
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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