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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:13:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Zn_dep_PLPC.html
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#====================================
# Aligned_structures: 2
#   1: 1ah7.pdb
#   2: 1ca1.pdb
#
# Length:        281
# Identity:       54/281 ( 19.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     54/281 ( 19.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           70/281 ( 24.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ah7.pdb                1  WSAEDKHKEGV--------NSHLWIVNRAIDIMSRN-TT-LV--KQDRVAQLNEWRTELE   48
1ca1.pdb                1  -----------WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQ   49
                                                H  IV     I                   L E   EL 

1ah7.pdb               49  NGIYAADYENPYYDNSTFASHFYDPDNGKTYIP-----------FAKQAKETGAKYFKLA   97
1ca1.pdb               50  LGSTYPDYDKN-AYD-LYQDHFWDPDTDNNF--SKDNSWYLAYSIPDTGESQIRKFSALA  105
                            G    DY            HF DPD                            K   LA

1ah7.pdb               98  GESYKNKDMKQAFFYLGLSLHYLGDVNQPMHAANFTNLSYPQGFHSKYENFVDTIKDNYK  157
1ca1.pdb              106  RYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDS--AGHVKFETFAEERKEQYK  163
                                    KQA FYLG   HY GD   P H AN T        H K E F    K  YK

1ah7.pdb              158  VTDG-NG-------YWNWKGT----NPEEWIHGAAVVAKQDYSGIVNDNTKDWFVKAAVS  205
1ca1.pdb              164  INTVGCKTNEDFYADILK-NKDFNAWSKEYARGFAKTGKSIYYSHASMSH----------  212
                                                       E   G A   K  Y                  

1ah7.pdb              206  QEYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWFDTYGDR-  245
1ca1.pdb              213  ------SWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGN  247
                                             L   Q  TAGYI           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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