################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 21:30:54 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aat.html
################################################################################################
#====================================
# Aligned_structures: 10
#   1: 1ajsa.pdb
#   2: 1ama.pdb
#   3: 1ars.pdb
#   4: 1ay8a.pdb
#   5: 1b8ga.pdb
#   6: 1bjwa.pdb
#   7: 1bw0a.pdb
#   8: 1yaaa.pdb
#   9: 2csta.pdb
#  10: 3tata.pdb
#
# Length:        513
# Identity:       11/513 (  2.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/513 (  3.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          186/513 ( 36.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ajsa.pdb               1  -APPSVFA-EV-------PQAQPVLVFKLIADFREDP-D------PRKVNLGVGAYR-TD   43
1ama.pdb                1  ---SSWWS-HV-------EMGPPDPILGVTEAFKRDT-N------SKKMNLGVGAYR-DD   41
1ars.pdb                1  -----MFE-NI-------TAAPADPILGLADLFRADE-R------PGKINLGIGVYK-DE   39
1ay8a.pdb               1  -----MLG-NL-------KPQAPDKILALMGEFRADP-R------QGKIDLGVGVYK-DA   39
1b8ga.pdb               1  -----------MLSRNAT-----SSYFLGWQEYEKNPYHEVHNT-NGIIQMGLAEN----   39
1bjwa.pdb               1  --------M-RGLSRRVQAMK-PSATVAVNAKALELRRQ-----GVDLVALTAGEP----   41
1bw0a.pdb               1  -------WD-VSMSNHAGLVF--NPIRTVSDNAK-PSPS-----PKPIIKLSVGDPTL--   42
1yaaa.pdb               1  S--ATLFN-NI-------ELLPPDALFGIKQRYGQDQ-R------ATKVDLGIGAYR-DD   42
2csta.pdb               1  --AASIFA-AV-------PRAPPVAVFKLTADFREDG-D------SRKVNLGVGAYR-TD   42
3tata.pdb               1  -----MFQ-KV-------DAYAGDPILTLMERFKEDP-R------SDKVNLSIGLYY-NE   39
                                                                             l  g      

1ajsa.pdb              44  DCQPWVLPVVRKVEQRI---ANN---------SSLNHEYLPILGLAEFRTCASRLALG--   89
1ama.pdb               42  NGKPYVLNCVRKAEAMI---AAK---------K-MDKEYLPIAGLADFTRASAELALG--   86
1ars.pdb               40  TGKTPVLTSVKKAEQYL---LEN---------E-TTKNYLGIDGIPEFGRCTQELLFG--   84
1ay8a.pdb              40  TGHTPIMRAVHAAEQRM---LET---------E-TTKTYAGLSGEPEFQKAMGELILG--   84
1b8ga.pdb              40  --QLC-FDLLESWLAKNPEAAAFKKNGESIFAE-L-ALFQDYHGLPAFKKAMVDFMAEIR   94
1bjwa.pdb              42  --DFDTPEHVKEAARRA---LAQ-----------GKTKYAPPAGIPELREALAEKFRREN   85
1bw0a.pdb              43  DKNLLTSAAQIKKLKEA---IDS---------Q-ECNGYFPTVGSPEAREAVATWWRNSF   89
1yaaa.pdb              43  NGKPWVLPSVKAAEKLI---HND---------SSYNHEYLGITGLPSLTSNAAKIIFG--   88
2csta.pdb              43  EGQPWVLPVVRKVEQLI---AGD---------GSLNHEYLPILGLPEFRANASRIALG--   88
3tata.pdb              40  DGIIPQLQAVAEAEARL---NAQ---------PHGASLYLPMEGLNCYRHAIAPLLFG--   85
                                                                 y    G                

1ajsa.pdb              90  -DDS---PALQE----KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKD-TPVYVSSPTW  140
1ama.pdb               87  -ENS---EAFKS----GRYVTVQGISGTGSLRVGANFLQRFFK-----FSRDVYLPKPSW  133
1ars.pdb               85  -KGS---ALIND----KRARTAQTPGGTGALRVAADFLAKNT----S-V-KRVWVSNPSW  130
1ay8a.pdb              85  -DGL---KS-------ETTATLATVGGTGALRQALELARMAN----P-D-LRVFVSDPTW  127
1b8ga.pdb              95  GNKV-------TFDPN---HLVLTAGATSANETFIFCLA-------DPG-EAVLIPTPYY  136
1bjwa.pdb              86  G--L-------SVTPE---ETIVTVGGKQALFNLFQAIL-------DPG-DEVIVLSPYW  125
1bw0a.pdb              90  V---HKEELKSTIVKD---NVVLCSGGSHGILMAITAIC-------DAG-DYALVPQPGF  135
1yaaa.pdb              89  -TQS---DALQE----DRVISVQSLSGTGALHISAKFFSKFF----P-D-KLVYLSKPTW  134
2csta.pdb              89  -DDS---PAIAQ----KRVGSVQGLGGTGALRIGAEFLRRWYNGNNNTA-TPVYVSSPTW  139
3tata.pdb              86  -ADH---PVLKQ----QRVATIQTLGGSGALKVGADFLKRYF----P-E-SGVWVSDPTW  131
                                                     g                         v    P  

1ajsa.pdb             141  ENHNGVFTTAG-FKDIRSYRYWDTEKRGLDLQGFLSDLENAP--------EF-SIFVLHA  190
1ama.pdb              134  GNHTPIFRDAG-L-QLQAYRYYDPKTCSLDFTGAMEDISKIP--------EK-SIILLHA  182
1ars.pdb              131  PNHKSVFNSAG-L-EVREYAYYDAENHTLDFDALINSLNEAQ--------AG-DVVLFHG  179
1ay8a.pdb             128  PNHVSIMNFMG-L-PVQTYRYFDAETRGVDFEGMKADLAAAK--------KG-DMVLLHG  176
1b8ga.pdb             137  PGFDRDLKWRTGV-EIVPIHCT-SSNGFQI---TETALEEAYQEAEKRNLRV-KGVLV-T  189
1bjwa.pdb             126  VSYPEMVRFAG-G-VVVEVETL-PEEGFVP---DPERVRRAIT-------PRTKALVV-N  171
1bw0a.pdb             136  PHYETVCKAYG-I-GMHFYNCR-PENDWEA---DLDEIRRLKD-------DKTKLLIV-T  181
1yaaa.pdb             135  ANHMAIFENQG-L-KTATYPYWANETKSLDLNGFLNAIQKAP--------EG-SIFVLHS  183
2csta.pdb             140  ENHNSVFMDAG-FKDIRTYRYWDAAKRGLDLQGLLDDMEKAP--------EF-SIFILHA  189
3tata.pdb             132  ENHVAIFAGAG-F-EVSTYPWYDEATNGVRFNDLLATLKTLP--------AR-SIVLLHP  180
                                     g                                                 

1ajsa.pdb             191  CAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFA----S-G----NLEKDAWAIR  241
1ama.pdb              183  CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFA----S-G----DINRDAWALR  233
1ars.pdb              180  CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA----R------GLEEDAEGLR  229
1ay8a.pdb             177  CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFG----D------GLEEDAAGTR  226
1b8ga.pdb             190  NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA----FS-SPSF----I-SVME  239
1bjwa.pdb             172  SPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLL----Y--EGEH----F-SPGR  220
1bw0a.pdb             182  NPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKD-PNATF----T-SVAD  235
1yaaa.pdb             184  CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFA----T-G----DLDKDAYAVR  234
2csta.pdb             190  CAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFA----S-G----SLDKDAWAVR  240
3tata.pdb             181  CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFG----A-G-----MEEDAYAIR  230
                              NP G                        D  Y g                       

1ajsa.pdb             242  YFVSE--------G-F--ELFCAQSFSKNFGLYNERVGNLTVVAK-----EPDSILRVLS  285
1ama.pdb              234  HFIEQ--------G-I--DVVLSQSYAKNMGLYGERAGAFTVICR-----DAEEAKRVES  277
1ars.pdb              230  AFAAM--------H-K--ELIVASSYSKNFGLYNERVGACTLVAA-----DSETVDRAFS  273
1ay8a.pdb             227  LIASR--------I-P--EVLIAASCSKNFGIYRERTGCLLALCA-----DAATRELAQG  270
1b8ga.pdb             240  VLKDRNCDENSEVW-Q--RVHVVYSLSKDLGLPGFRVGAIYSN-----------DDMVVA  285
1bjwa.pdb             221  VA-----------P-E--HTLTVNGAA-AFAMTGWRIGYACG------------PKEVIK  253
1bw0a.pdb             236  FE-----------TTV--PRVILGGTA-NLVVPGWRLGWLLYVDPH-----GN-GPSFLE  275
1yaaa.pdb             235  LGVEK--------LSTVSPVFVCQSFAKNAGMYGERVGCFHLALT-KQAQNKTIKPAVTS  285
2csta.pdb             241  YFVSE--------G-F--ELFCAQSFSKNFGLYNERVGNLSVVGK-----DEDNVQRVLS  284
3tata.pdb             231  AIASA--------G-L--PALVSNSFSKIFSLYGERVGGLSVMCE-----DAEAAGRVLG  274
                                                              R G                      

1ajsa.pdb             286  QMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLE-AL  344
1ama.pdb              278  QLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK-KE  336
1ars.pdb              274  QMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQ-EK  332
1ay8a.pdb             271  AMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELR-DL  329
1b8ga.pdb             286  AATKMSS-FG-LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG---  340
1bjwa.pdb             254  AMASVSSQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG---  310
1bw0a.pdb             276  GLKRVGM-LVCGPCTVVQAALGEALLN--TPQEHLDQIVAKIEESAMYLYNHIGECIG--  330
1yaaa.pdb             286  QLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLV-KL  344
2csta.pdb             285  QMEKIVRTTWSNPPSQGARIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLE-SL  343
3tata.pdb             275  QLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLS-TE  333
                                       p           L                                   

1ajsa.pdb             345  KTP-GTWNHITDQIGMFSFTGL-------------NPKQVEYLINQKHIYLLPS------  384
1ama.pdb              337  GSS-HNWQHITDQIGMFCFTGL-------------KPEQVERLTKEFSIYMTKD------  376
1ars.pdb              333  GAN-RDFSFIIKQNGMFSFSGL-------------TKEQVLRLREEFGVYAVAS------  372
1ay8a.pdb             330  SGS-DRFGFVAEHRGMFSRLGA-------------TPEQVKRIKEEFGIYMVGD------  369
1b8ga.pdb             341  -ISCLNG-----NAGLFCWVDM-RHLLR-SNTFEAEMELWKKIVYEVHLNISPGSSCHCT  392
1bjwa.pdb             311  -LKAVRP-----SGAFYVLMDT-SPIA---P---DEVRAAERLL-EAGVAVVPGTDFAAF  356
1bw0a.pdb             331  -LAPTMP-----RGAMYLMSRIDLEKYRDIK---TDVEFFEKLLEEENVQVLPGTIFHAP  381
1yaaa.pdb             345  GTP-GNWDHIVNQCGMFSFTGL-------------TPQMVKRLEETHAVYLVAS------  384
2csta.pdb             344  GTP-GTWNHITDQIGMFSFTGL-------------NPKQVEYMIKEKHIYLMAS------  383
3tata.pdb             334  MPE-RNFDYLLNQRGMFSYTGL-------------SAAQVDRLREEFGVYLIAS------  373
                                                                                       

1ajsa.pdb             385  ----GRINMCGLTTKNLDYVATSIHEAVTKIQ-  412
1ama.pdb              377  ----GRISVAGVASSNVGYLAHAIHQVTK----  401
1ars.pdb              373  ----GRVNVAGMTPDNMAPLCEAIVAVL-----  396
1ay8a.pdb             370  ----SRINIAGLNDNTIPILARAIIEVGV----  394
1b8ga.pdb             393  EPGWFRVCFANLPERTLDLAMQRLKAFVG----  421
1bjwa.pdb             357  G--HVR-LSYATSEENLRKALERFARVL-----  381
1bw0a.pdb             382  G--FTR-LTTTRPVEVYREAVERIKAFCQRHAA  411
1yaaa.pdb             385  ----GRASIAGLNQGNVEYVAKAIDEVVRFYA-  412
2csta.pdb             384  ----GRINMCGLTTKNLDYVAKSIHEAVTKIQ-  411
3tata.pdb             374  ----GRMCVAGLNTANVQRVAKAFAAVM-----  397
                                R                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################