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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 05:45:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/alpha-amylase_C.html
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#====================================
# Aligned_structures: 21
# 1: 1avaa.pdb
# 2: 1bag.pdb
# 3: 1bvza.pdb
# 4: 1cgt.pdb
# 5: 1ciu.pdb
# 6: 1cyg.pdb
# 7: 1d3ca.pdb
# 8: 1g5aa.pdb
# 9: 1g94a.pdb
# 10: 1gjwa.pdb
# 11: 1hvxa.pdb
# 12: 1hx0a.pdb
# 13: 1jae.pdb
# 14: 1pama.pdb
# 15: 1qhpa.pdb
# 16: 1smaa.pdb
# 17: 1smd.pdb
# 18: 1uok.pdb
# 19: 1vjs.pdb
# 20: 2aaa.pdb
# 21: 7taa.pdb
#
# Length: 146
# Identity: 0/146 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 0/146 ( 0.0%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 104/146 ( 71.2%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1avaa.pdb 1 HNE--SKLQIIE----A---DADLYLAEID------G-KVIVKLG--P---RYDVGNL-- 37
1bag.pdb 1 --------QPEELSNPN--GNNQIFMNQRG------S-HGVVLANAGS---SSVSI--NT 38
1bvza.pdb 1 -----GNVRSWH----ADKQ-ANLYAFVRT-VQ---DQHVGVVLNNRG---EKQTV--LL 41
1cgt.pdb 1 -----GSTQQRW----I---NNDVYVYERK-FG---KSVAVVAVNRNL---STSAS--IT 39
1ciu.pdb 1 -----GTTQQRW----I---NNDVYIYERK-FG---NNVALVAINRNL---STSYN--IT 39
1cyg.pdb 1 -----GDTEQRW----I---NGDVYVYERQ-FG---KDVVLVAVNRSS---SSNYS--IT 39
1d3ca.pdb 1 -----GSTQERW----I---NNDVLIYERK-FG---SNVAVVAVNRNL---NAPAS--IS 39
1g5aa.pdb 1 --R--LVTFNTN--------NKHIIGYIRN------N-ALLAFGNFSE---YPQTV--TA 36
1g94a.pdb 1 ------NWAVTNWWD-N---TNNQISFGRG------S-SGHMAINKED---STLTA--TV 38
1gjwa.pdb 1 -----GKFE-NL----T---TKDLVMYSYE-KN---GQKIVIAANVGK---EPKE---I- 36
1hvxa.pdb 1 ---YAY-GTQHD-YL-D---HSDIIGWTREGVTEKPGSGLAALITDG----PGGSK--WM 45
1hx0a.pdb 1 -------QPFANWWD-N---GSNQVAFGRG------N-RGFIVFNNDD---WQLSS--TL 37
1jae.pdb 1 ------GTQVENWWS-N---DDNQIAFSRG------S-QGFVAFTNG----GDLNQ--NL 37
1pama.pdb 1 -----GSTHERW----I---NNDVIIYERK-FG---NNVAVVAINRNM---NTPAS--IT 39
1qhpa.pdb 1 -----GTTTQRW----I---NNDVYIYERK-FF---NDVVLVAINRNT---QSSYS--IS 39
1smaa.pdb 1 -----GDVAFLT----AD-DEVNHLVYAKT-DG---NETVMIIINRSN---EAAEI--PM 41
1smd.pdb 1 -------QPFTNWYD-N---GSNQVAFGRG------N-RGFIVFNNDD---WTFSL--TL 37
1uok.pdb 1 -----GSYDLIL----EN--NPSIFAYVRT-YG---VEKLLVIANFTA---EECIFE-LP 41
1vjs.pdb 1 ---YAY-GAQHD-YF-D---HHDIVGWTREGDSSVANSGLAALITDG----PGGAK--RM 45
2aaa.pdb 1 -----YANDAFY----T---DSNTIAMAKG-TS---GSQVITVLSNKGSSGSSYTL--TL 42
7taa.pdb 1 -----YKNWPIY----K---DDTTIAMRKG-TD---GSQIVTILSNKGASGDSYTL--SL 42
1avaa.pdb 38 ---------IP------GGFKVAA----------------------HG-----------N 49
1bag.pdb 39 -A---TK--LP-DG----RYDNKAG----------------AGSFQVND-GKLTG-TINA 69
1bvza.pdb 42 -Q---VPE-SG-GK----TWLDCL------------T----GEEVHGK-QGQLKL-TLRP 73
1cgt.pdb 40 GL--STS--LP-TG----SYTDVLG-----------GVLN-GNNITSTNGSINNFTLAAG 78
1ciu.pdb 40 GL--YTA--LP-AG----TYTDVLG-----------GLLN-GNSISVASDGSVTPFTLSA 78
1cyg.pdb 40 GL--FTA--LP-AG----TYTDQLG-----------GLLD-GNTIQVGSNGSVNAFDLGP 78
1d3ca.pdb 40 GL--VTS--LP-QG----SYNDVLG-----------GLLN-GNTLSVGSGGAASNFTLAA 78
1g5aa.pdb 37 -HTL-QA--MP--F----KAHDLI------------G----GKTVSLN----QDL-TLQP 65
1g94a.pdb 39 -Q---TD--MA-SG----QYCNVLKGELSADAKSCS-----GEVITVNSDGTINL-NIGA 81
1gjwa.pdb 37 ---------TG-GRVWNGKWSDEE-------------------KVVLK-----------P 56
1hvxa.pdb 46 -Y---VGKQHA-GK----VFYDLTG-----------N---RSDTVTINSDGWGEF-KVNG 81
1hx0a.pdb 38 -Q---TG--LP-GG----TYCDVISGDKVG--NSCT-----GIKVYVSSDGTAQF-SISN 78
1jae.pdb 38 -N---TG--LP-AG----TYCDVISGELSG--GSCT-----GKSVTVGDNGSADI-SLGS 78
1pama.pdb 40 GL--VTS--LP-RG----SYNDVLG-----------GILN-GNTLTVGAGGAASNFTLAP 78
1qhpa.pdb 40 GL--QTA--LP-NG----SYADYLS-----------GLLG-GNGISVSNGSVASFTLAPG 78
1smaa.pdb 42 -P---ID--AR-GK----WLVNLL------------T----GERFAAE-AETLCV-SLPP 72
1smd.pdb 38 -Q---TG--LP-AG----TYCDVISGDKIN--GNCT-----GIKIYVSDDGKAHF-SISN 78
1uok.pdb 42 -E----D--IS-YSE--VELLIHN------------------YDVENGPI--ENI-TLRP 70
1vjs.pdb 46 -Y---VGRQNA-GE----TWHDITG-----------N---RSEPVVINSEGWGEF-HVNG 81
2aaa.pdb 43 -S--GSG--YTSGT----KLIEAY------------T----CTSVTVDSSGDIPV-PMAS 76
7taa.pdb 43 -S--GAG--YTAGQ----QLTEVI------------G----CTTVTVGSDGNVPV-PMAG 76
1avaa.pdb 50 ----DYAVWEKI-------------- 57
1bag.pdb 70 R---SVAVLYPD-------------- 78
1bvza.pdb 74 Y---QGMILWNGR------------- 83
1cgt.pdb 79 A---TAVWQYTTA------------- 88
1ciu.pdb 79 G---EVAVWQYVSS------------ 89
1cyg.pdb 79 G---EVGVWAYSAT------------ 89
1d3ca.pdb 79 G---GTAVWQYTAAT----------- 90
1g5aa.pdb 66 Y---QVMWLEIA-------------- 74
1g94a.pdb 82 W---DAMAIHKN----AKLN------ 94
1gjwa.pdb 57 L---EFALVVQ--------------- 64
1hvxa.pdb 82 G---SVSVWVPR-------------- 90
1hx0a.pdb 79 SAEDPFIAIHAE----SKL------- 93
1jae.pdb 79 AEDDGVLAIHVN----AKL------- 93
1pama.pdb 79 G---GTAVWQYTTDA----------- 90
1qhpa.pdb 79 A---VSVWQYSTS------------- 88
1smaa.pdb 73 Y---GFVLYAVES--W---------- 83
1smd.pdb 79 SAEDPFIAIHAE----SKL------- 93
1uok.pdb 71 Y---EAMVFKLK-------------- 79
1vjs.pdb 82 G---SVSIYVQ--------------- 89
2aaa.pdb 77 G---LPRVLLPA---SVVD-SSSLCG 95
7taa.pdb 77 G---LPRVLYPT---EKLA-GSKICS 95
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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