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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 13:26:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/annexin.html
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#====================================
# Aligned_structures: 6
#   1: 1aeia.pdb
#   2: 1ala.pdb
#   3: 1ann.pdb
#   4: 1avha.pdb
#   5: 1axn.pdb
#   6: 2ran.pdb
#
# Length:        326
# Identity:       94/326 ( 28.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    149/326 ( 45.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/326 (  4.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aeia.pdb               1  -V-------VQGTVKPHASFNSREDAETLRKAMKGIGTDEKSITHILATRSNAQRQQIKT   52
1ala.pdb                1  KY-------TRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIAS   53
1ann.pdb                1  ----------GGTVKAASGFNAAEDAQTLRKAMKGLGTDEDAIINVLAYRSTAQRQEIRT   50
1avha.pdb               1  QV-------LRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISA   53
1axn.pdb                1  --SASIWVGHRGTVRDYPDFSPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVK   58
2ran.pdb                1  -A-------LRGTVTDFSGFDGRADAEVLRKAMKGLGTDEDSILNLLTARSNAQRQQIAE   52
                                      GTV     F    DAe lrKAmkG GTDE  i   L  RsnAQRQ I  

1aeia.pdb              53  DYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLGTDENALIDILC  112
1ala.pdb               54  AFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILA  113
1ann.pdb               51  AYKTTIGRDLMDDLKSELSGNFEQVILGMMTPTVLYDVQELRKAMKGAGTDEGCLIEILA  110
1avha.pdb              54  AFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIA  113
1axn.pdb               59  EYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILT  118
2ran.pdb               53  EFKTLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIA  112
                              t  G  L ddlKseL G fE     l  p    da  L  a KGaGT E  L eI  

1aeia.pdb             113  TQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAHAAED  172
1ala.pdb              114  SRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVEEALVEKD  173
1ann.pdb              111  SRTPEEIRRINQTYQLQYGRSLEDDIRSDTSFMFQRVLVSLSAGGRDESNYLDDALMRQD  170
1avha.pdb             114  SRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDAGIDEAQVEQD  173
1axn.pdb              119  TRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQD  178
2ran.pdb              113  SRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELD  172
                            rt      I q y   Y   Led     TSg  qr Lv l    Rd       a    D

1aeia.pdb             173  AAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAI-ENEFSGDIK  231
1ala.pdb              174  AQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETS-GDLE  232
1ann.pdb              171  AQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRIAQKDIEQSI-KSETSGSFE  229
1avha.pdb             174  AQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETS-GNLE  232
1axn.pdb              179  AQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSI-KGELSGHFE  237
2ran.pdb              173  AQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETI-DRETSGNLE  231
                           Aq l  AGE  wGTDE  F   l  Rs   L   Fd Y  Is   I   I      G  e

1aeia.pdb             232  NGLLAIVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGK  291
1ala.pdb              233  KLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAK  292
1ann.pdb              230  DALLAIVKCMRNKSAYFAERLYKSMKGLGTDDDTLIRVMVSRAEIDMLDIRANFKRLYGK  289
1avha.pdb             233  QLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFAT  292
1axn.pdb              238  DLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGY  297
2ran.pdb              232  NLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFAT  291
                             LLA Vk  r   Ay AE L   mKG GTdd TLiR  VSRsEIDl  Ir  F      

1aeia.pdb             292  SLYEFIADDCSGDYKDLLLQITGH--  315
1ala.pdb              293  SLYQMIQKDTSGDYRKALLLLCGG--  316
1ann.pdb              290  SLYSFIKGDTSGDYRKVLLILCGGDD  315
1avha.pdb             293  SLYSMIKGDTSGDYKKALLLLCGEDD  318
1axn.pdb              298  SLYSAIKSDTSGDYEITLLKICGGDD  323
2ran.pdb              292  SLYSMIKGDTSGDYKKALLLLCGGE-  316
                           SLY  I  DtSGDY   LL  cG   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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