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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:45:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/asprs.html
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#====================================
# Aligned_structures: 3
#   1: 1asza.pdb
#   2: 1b8aa.pdb
#   3: 1lyla.pdb
#
# Length:        564
# Identity:       55/564 (  9.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    227/564 ( 40.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          173/564 ( 30.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1asza.pdb               1  -----------------EDTAKDNYGKLPLIQSRDSDRTGQK-RVKFVDLD-------EA   35
1b8aa.pdb               1  M----------------------------------------YRTHYSSEIT-------E-   12
1lyla.pdb               1  -FNDELRNRREKLAALRQQGVAFP--------------NDFRRDHTSDQLHEEFDAKDNQ   45
                                                                       h s  l        e 

1asza.pdb              36  KDS--DKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGT-ISKNMVK-WAG   91
1b8aa.pdb              13  ELN--GQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK----KVDPELFK-LIP   64
1lyla.pdb              46  ELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARD----SLPEGVYNDQFK  100
                           el     eV vagrv   r  G    Fltlrd  g iQ  v              k    

1asza.pdb              92  SLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA  151
1b8aa.pdb              65  KLRSEDVVAVEGVVNFTP----KAK-LGFEILPEKIVVLNRAETPLPLDPTG--------  111
1lyla.pdb             101  KWDLGDIIGARGTLFKTQ-TG------ELSIHCTELRLLTKALR----------------  137
                           kl lediv vrG v kt           leIh tki  l  a                  

1asza.pdb             152  EAAGLPV--VNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKL  208
1b8aa.pdb             112  ----KVK--AELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKI  164
1lyla.pdb             138  -------PLPDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMM  190
                                      ldtRl  R  DLr      aiF irs v  a R f    gF EvhTPk 

1asza.pdb             209  LGAPSEGGSSVFEVTYF--KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHR  266
1b8aa.pdb             165  IATATEGGTELFPMKYF--EEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTR  222
1lyla.pdb             191  QVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVR  249
                              p egg   F   yf    dayLa sPqlyk  l v gfeRVyEI p FRaE  nt R

1asza.pdb             267  HMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQY---PVEEFK  323
1b8aa.pdb             223  HLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILN-------FELEE  275
1lyla.pdb             250  HNPEFTMMELYMA-YADYHDLIELTESLFRTLAQEVLG----------TTKVTYGEHVFD  298
                           H  Eft  d eMA  edyhev   le Lf     ev                    e f 

1asza.pdb             324  LPKDGKMVRLTYKEGIEMLRA-------------------AGKEIG----DFEDL-STEN  359
1b8aa.pdb             276  P--KLPFPRVSYDKALEILGD-------------------LGKEIP----WGEDI-DTEG  309
1lyla.pdb             299  --FGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRI-VTEIF  355
                                pf rlty eaie lr                     Gkei      ged   te 

1asza.pdb             360  EKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRI  419
1b8aa.pdb             310  ERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQRE  369
1lyla.pdb             356  DEVAEAHL----I-QPTFITEYPAE-VSPLARRNDVNPEITDRFEFFIGGREIGNGFSEL  409
                           e  lgk          yfl  yP E  pfy m  d nPei   fdff rG EI sG qr 

1asza.pdb             420  HDHALLQERMKAHGL------SPEDPG-----LKDYCDGFSYGCPPHAGGGIGLERVVMF  468
1b8aa.pdb             370  HRHDILVEQIKEKGL------NPES-------FEFYLKAFRYGMPPHGGFGLGAERLIKQ  416
1lyla.pdb             410  NDAEDQAERFQEQV-NAKAAGDD----EAMFYDEDYVTALEYGLPPTAGLGIGIDRMIML  464
                           hdh  l Er ke g        p          edY  af YG PPhaG GiG eR im 

1asza.pdb             469  YLDLKNIRRASLFPRDPKRLRP--  490
1b8aa.pdb             417  MLDLPNIREVILFPRDRRRLTP--  438
1lyla.pdb             465  FTNSHTIRDVILFPAM------RP  482
                            ldl nIR viLFPrd        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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