################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 18:59:25 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/biopterin_H.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1toh.pdb # 2: 4pah.pdb # # Length: 336 # Identity: 196/336 ( 58.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 196/336 ( 58.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 39/336 ( 11.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1toh.pdb 1 KVPWFPRKVSELDKC-----------DLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPH 49 4pah.pdb 1 TVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPR 60 VPWFPR ELD D DHPGF D VYR RRK A IA Y HG PIP 1toh.pdb 50 VEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKE 109 4pah.pdb 61 VEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQT 120 VEY EE TW V TLK LY THAC E F LLE YCG ED IPQLEDVS FL 1toh.pdb 110 RTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLAD 169 4pah.pdb 121 CTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSD 180 TGF LRPVAGLLS RDFL LAFRVF CTQYIRH S PM PEPD CHELLGHVP D 1toh.pdb 170 RTFAQFSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLH 229 4pah.pdb 181 RSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQY 240 R FAQFSQ IGLASLGA DE IEKL T YWFTVEFGLCKQ KAYGAGLLSS GEL 1toh.pdb 230 SLSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDP 289 4pah.pdb 241 CLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDP 300 LSE P A Q Y QP Y V ESFNDAK K RN A I RPFSV DP 1toh.pdb 290 YTLAIDVLDSPHTIQRSLEGVQDELHTLAHALSAIS 325 4pah.pdb 301 YTQRIEVL---------------------------- 308 YT I VL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################