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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 17:26:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/biotin_lipoyl.html
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#====================================
# Aligned_structures: 7
#   1: 1bdo.pdb
#   2: 1fyc.pdb
#   3: 1ghk.pdb
#   4: 1iyv.pdb
#   5: 1lac.pdb
#   6: 1pmr.pdb
#   7: 1qjoa.pdb
#
# Length:        136
# Identity:        4/136 (  2.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      7/136 (  5.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           78/136 ( 57.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bdo.pdb                1  ---EI--SGHI---------VRSPM-V---GTFYRTPS---P-------DAKAFIEVGQK   32
1fyc.pdb                1  --GSNMSYPPH----M-Q--VLLP--------------ALSP-TMTMGTVQRWEKKVGEK   36
1ghk.pdb                1  --------AIDIKAP---------TFPESIADGTV---------------ATWHKKPGEA   28
1iyv.pdb                1  --------SEIIR---------VPDI-----------------G-GDGEVIELLVKTGDL   25
1lac.pdb                1  -A-------------FEFKL---P--------------DIG-EGIHEGEIVKWFVKPGDE   28
1pmr.pdb                1  -------SSVD---------ILVP--------------DLP-ESVADATVATWHKKPGDA   29
1qjoa.pdb               1  M-------VKEVN---------VPDI-----------------GGDEVEVTEVMVKVGDK   27
                                                                                  k G  

1bdo.pdb               33  VNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVE-FDEPLVVIE-----------   80
1fyc.pdb               37  LSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV--E--KEADIS   92
1ghk.pdb               29  VKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVL-SGELLGKLTE--G----G--   79
1iyv.pdb               26  IEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLK-EGDAIIELE-P-A----A--   76
1lac.pdb               29  VNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVAT-VGQTLITLD-APGY------   80
1pmr.pdb               30  VVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVT-SRQILGRLR-EG--N-----   80
1qjoa.pdb              28  VAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVK-TGSLIMIFE-V-E----G--   78
                                 l   e  K          G         G                         

1bdo.pdb                   ----------------     
1fyc.pdb               93  AFADYRPT--EVTDLK  106
1ghk.pdb                   ----------------     
1iyv.pdb               77  ------GAR-------   79
1lac.pdb                   ----------------     
1pmr.pdb                   ----------------     
1qjoa.pdb              79  --------AA------   80
                                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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