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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Wed Jul 27 15:25:54 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/bromodomain.html
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#====================================
# Aligned_structures: 4
#   1: 1e6ia.pdb
#   2: 1eqfa1.pdb
#   3: 1eqfa2.pdb
#   4: 1f68a.pdb
#
# Length:        147
# Identity:       18/147 ( 12.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     39/147 ( 26.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/147 ( 30.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e6ia.pdb               1  R-------------------------GPHDAAIQNILTELQ-NHAAAWPFLQPVNKEEVP   34
1eqfa1.pdb              1  -GTTVHCDYLNRPHKSI-HRRRTDPMVTLSSILESIINDMR-DLPNTYPFHTPVNAKVVK   57
1eqfa2.pdb              1  -----------------LLDD--DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP   41
1f68a.pdb               1  G-------------------------DQLYTTLKNLLAQIK-SHPSAWPFMEPVKKSEAP   34
                                                           l ni        p  wPF  PVnk  vp

1e6ia.pdb              35  DYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEK   94
1eqfa1.pdb             58  DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD  117
1eqfa2.pdb             42  DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVN  101
1f68a.pdb              35  DYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEK   94
                           DYY  I  PmDL T         Y  re F  d  l   N   YNgp   y   a     

1e6ia.pdb              95  FFNNKVKEI-PEYSHLI----------  110
1eqfa1.pdb            118  LCDEKLKEKEDKLARLEKAINP-----  139
1eqfa2.pdb            102  VCYQTLTEYDEHLTQLEKDICTAKEAA  128
1f68a.pdb              95  FFYFKLKEG------------------  103
                               klkE                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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