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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:57:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/chey.html
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#====================================
# Aligned_structures: 5
#   1: 1ntr.pdb
#   2: 1rnl.pdb
#   3: 1srra.pdb
#   4: 1tmy.pdb
#   5: 3chy.pdb
#
# Length:        211
# Identity:        9/211 (  4.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     23/211 ( 10.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           98/211 ( 46.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ntr.pdb                1  -MQRGIVWVVDDDSSIRWVLERALAGAG-L-TCTTFENGNEVLAALASKTPDVLLSDIRM   57
1rnl.pdb                1  --EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNM   58
1srra.pdb               1  ---NEKILIVDDQSGIRILLNEVFNKEG-YQ-TFQAANGLQALDIVTKERPDLVLLDMKI   55
1tmy.pdb                1  ---GKRVLIVDDAAFMRMMLKDIITKAG-YEVAGEATNGREAVEKYKELKPDIVTMDITM   56
3chy.pdb                1  ADKELKFLVVDDFSTMRRIVRNLLKELG-FNNVEEAEDGVDALNKLQAGGYGFVISDWNM   59
                                  l vDD    R          g       a nG           pd    D  m

1ntr.pdb               58  PGMDGLALLKQIKQR--HPMLPVIIMTAHS-DLDAAVSAYQQGA--FDYLPKPFDIDEAV  112
1rnl.pdb               59  PGMNGLETLDKLREK--SLSGRIVVFSVS-NHEEDVVTALKR--GADGYLLKDMEPEDLL  113
1srra.pdb              56  PGMDGIEILKRMKVI--DENIRVIIMTAY-GELDMIQESKEL--GALTHFAKPFDIDEIR  110
1tmy.pdb               57  PEMNGIDAIKEIMKI--DPNAKIIVCSAM-GQQAMVIEAIKA--GAKDFIVKPFQPSRVV  111
3chy.pdb               60  PNMDGLELLKTIRADGAMSALPVLMVTAE-AKKENIIAAAQA--GASGYVVKPFTAATLE  116
                           P M G   lk                 a          a            Kpf      

1ntr.pdb              113  ALVERAI---S-------------------------------------------------  120
1rnl.pdb              114  KALHQAA---AGEMVLSEALTPVLAASLQLTPRERDILKLIAQGLPNKMIARRLDITEST  170
1srra.pdb             111  DAVKKYL---P-L-----------------------------------------------  119
1tmy.pdb              112  EALNKVS-----------------------------------------------------  118
3chy.pdb              117  EKLNKIFEKLG-------------------------------------------------  127
                                                                                       

1ntr.pdb              121  --------------------HYQ-E------  124
1rnl.pdb              171  VKVHVKHMLKKMKLKSRVEAAVWVH-QERIF  200
1srra.pdb                  -------------------------------     
1tmy.pdb                   -------------------------------     
3chy.pdb              128  -------------------------M-----  128
                                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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